Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 2.8e-194 681.8 348 100.0
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 4.6e-181 637.9 339 94.7
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 7.7e-136 487.6 342 74.0
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 1.8e-132 476.5 340 70.9
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 2.9e-127 459.1 340 70.0
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 1.5e-126 456.8 326 70.2
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 2.1e-125 453.0 340 67.6
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 4.7e-125 451.8 336 68.2
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 3.0e-124 449.1 336 67.6
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 5.2e-124 448.4 330 68.2
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 2.2e-122 443.0 347 64.8
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 2.8e-122 442.6 334 66.5
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 3.7e-122 442.2 340 67.1
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 3.7e-122 442.2 336 67.0
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 3.7e-122 442.2 343 67.6
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 1.4e-121 440.3 344 66.6
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 1.8e-121 439.9 345 64.6
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 4.1e-121 438.7 326 69.0
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 7.7e-120 434.5 339 64.9
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 1.3e-119 433.7 340 64.7
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 1.7e-119 433.3 340 63.8
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 5.0e-119 431.8 326 65.6
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 6.5e-119 431.4 339 63.4
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 8.5e-119 431.0 326 65.3
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 1.1e-118 430.6 326 65.6
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 1.5e-118 430.3 340 64.7
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 1.9e-118 429.9 326 65.0
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 3.2e-118 429.1 327 67.0
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 9.4e-118 427.6 340 63.8
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 1.2e-117 427.2 325 67.1
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 1.6e-117 426.8 329 67.2
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 1.6e-117 426.8 344 65.7
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 2.1e-117 426.4 326 66.6
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 4.7e-117 425.2 339 62.5
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 3.0e-116 422.5 330 63.3
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 6.8e-116 421.4 330 63.0
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 6.8e-116 421.4 325 64.0
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 2.6e-115 419.5 331 63.4
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 3.4e-115 419.1 330 62.7
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 9.8e-115 417.5 341 62.2
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 2.2e-114 416.4 325 65.5
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 3.7e-114 415.6 325 62.8
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 4.9e-114 415.2 347 64.8
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.8e-113 413.3 325 63.1
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.4e-113 412.9 346 62.4
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 4.1e-113 412.1 330 63.9
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 9.2e-113 411.0 345 62.3
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 1.2e-112 410.6 346 61.8
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 7.7e-112 407.9 353 60.9
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 7.7e-112 407.9 353 60.9
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 1.7e-111 406.8 347 61.4
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 6.6e-111 404.8 358 60.9
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 2.8e-109 399.4 341 61.9
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 3.6e-109 399.1 349 58.7
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 4.7e-109 398.7 338 60.4
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 6.1e-109 398.3 349 58.5
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 1.2e-107 394.0 353 59.5
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 2.0e-107 393.3 335 59.7
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 4.4e-107 392.1 335 59.4
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 7.5e-107 391.3 335 61.2
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 7.5e-107 391.3 326 63.2
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 1.1e-105 387.5 333 60.4
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 1.2e-104 384.0 335 61.2
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 5.9e-104 381.7 348 57.8
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 2.3e-103 379.8 341 57.8
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 5.0e-103 378.6 326 59.8
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 8.6e-103 377.9 342 59.9
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 1.5e-102 377.1 334 57.8
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.9e-102 376.7 349 57.3
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 3.3e-102 375.9 354 58.8
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 5.6e-102 375.2 353 57.5
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 2.1e-101 373.2 339 56.3
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 2.8e-101 372.9 339 56.3
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 1.8e-100 370.2 332 59.3
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 1.8e-100 370.2 339 58.7
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 3.1e-100 369.4 338 59.5
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 3.1e-100 369.4 347 56.2
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 6.8e-100 368.2 342 58.8
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 8.9e-100 367.9 336 58.3
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 1.5e-99 367.1 339 59.9
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 9.8e-99 364.4 337 57.3
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.2e-98 363.2 346 57.2
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 1.1e-97 360.9 336 56.5
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 4.1e-97 359.0 345 53.9
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 7.0e-97 358.2 336 58.9
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.2e-96 357.5 352 56.0
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 4.6e-96 355.5 356 55.6
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 1.0e-95 354.4 337 56.4
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 1.3e-95 354.0 343 55.1
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.7e-95 353.6 287 64.8
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 1.9e-94 350.1 343 57.4
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 2.5e-94 349.7 353 53.3
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 3.3e-94 349.4 330 56.1
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 3.3e-94 349.4 330 56.1
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 5.6e-94 348.6 347 54.5
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 7.3e-94 348.2 339 56.9
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 9.5e-94 347.8 330 55.8
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 1.1e-92 344.4 330 55.5
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 1.1e-92 344.4 330 55.5
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 1.2e-91 340.9 336 55.1
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 7.8e-88 328.2 336 54.2
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.9e-86 323.6 287 61.0
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 3.3e-86 322.8 331 52.3
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.8e-84 317.0 334 51.2
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 8.9e-84 314.7 245 63.3
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 3.4e-83 312.8 340 50.0
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 7.6e-83 311.6 282 57.4
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 2.9e-82 309.7 252 60.7
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 6.4e-82 308.5 341 50.7
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 3.2e-81 306.2 268 58.2
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 1.9e-73 280.4 334 48.2
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 4.2e-73 279.3 311 49.5
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 3.0e-71 273.1 350 45.1
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 6.6e-71 271.9 351 48.4
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 4.3e-70 269.2 326 45.1
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 7.3e-70 268.5 342 44.7
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 1.4e-68 264.2 327 45.6
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 2.4e-60 236.9 326 38.0
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.1e-60 236.5 270 47.8
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 2.4e-57 226.9 327 37.3
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 9.3e-57 224.9 272 50.4
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 6.7e-55 218.8 328 39.3
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 2.2e-50 203.8 231 48.5
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.3e-47 194.5 231 44.2
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.8e-47 194.1 173 53.2
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 1.1e-44 184.9 138 65.2
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.1e-40 170.6 124 64.5
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 5.3e-36 156.0 316 34.8
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 2.3e-31 140.6 353 29.5
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 3.3e-14 83.6 63 60.3
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 4.8e-13 79.7 123 46.3


User provided reference genes

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