Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 2071.2 1048 100.0
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1884.0 1040 93.6
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1604.7 1045 79.9
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1546.9 1040 77.6
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1541.6 1046 77.2
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1530.8 1049 77.2
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1529.2 1046 76.4
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1522.7 1048 76.6
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1519.6 1045 76.2
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1519.6 1045 76.2
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1510.4 1046 75.9
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1506.9 1046 75.0
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1505.7 1046 75.2
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1499.2 1047 75.7
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1498.8 1077 73.8
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1496.5 1047 74.7
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1483.8 1047 74.4
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1469.9 1090 71.5
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1466.4 1044 74.1
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1465.3 1048 74.5
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1459.1 1042 74.0
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1458.4 1055 74.0
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1456.4 1045 73.3
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1454.5 1046 73.5
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1453.7 1047 74.7
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1451.8 1051 73.1
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1445.3 1051 73.6
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1442.9 1046 72.5
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1442.6 1052 73.2
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1441.0 1077 71.2
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1439.5 1053 73.2
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1438.7 1049 72.4
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1437.9 1048 71.9
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1432.5 1046 71.9
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1429.5 1050 71.6
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1427.2 1046 71.7
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1426.8 1043 72.4
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1419.4 1045 72.8
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1418.3 1055 71.6
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1416.0 1122 69.1
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1412.1 1051 72.7
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1411.0 1256 63.0
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1410.6 1057 72.0
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1410.6 1051 72.0
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1407.1 1052 70.5
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1406.0 1055 71.3
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1405.6 1056 71.0
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1395.9 1045 70.8
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1395.9 1064 70.5
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1395.6 1046 70.7
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1393.3 1044 71.8
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1392.9 1047 71.2
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1388.2 1044 71.8
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1384.0 1039 70.6
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1383.2 1048 70.4
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1380.5 1043 71.7
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1375.9 1065 69.0
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1359.7 1049 68.6
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1356.7 1067 69.5
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1355.5 1045 68.1
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1352.0 1051 70.1
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1352.0 1060 69.6
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1350.1 1045 67.8
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1343.6 1050 68.8
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1342.8 1045 68.0
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1342.0 953 74.9
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1326.2 1048 68.5
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1325.5 1047 66.5
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1325.1 1051 68.6
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1323.9 1046 66.6
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1320.4 1049 68.0
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1317.0 1048 67.5
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1316.6 1044 67.0
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1316.2 1047 66.5
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1316.2 1048 67.0
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1315.8 1046 67.3
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1313.5 1046 67.4
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1312.7 1050 66.7
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1311.6 1046 67.1
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1309.7 1065 65.7
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1308.1 1049 66.7
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1307.0 1068 65.3
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1304.3 1048 65.9
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1295.0 1045 65.9
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1287.7 1185 60.1
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1271.1 1047 67.4
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1268.4 891 75.1
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1265.0 1032 68.2
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1265.0 889 74.5
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1261.9 1039 64.3
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1244.2 1056 63.4
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1242.3 1041 67.1
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1235.3 1044 64.1
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1235.3 1049 62.5
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1234.6 869 74.1
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1232.6 1106 61.1
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1222.6 1051 63.7
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1215.7 1033 62.9
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1204.9 1044 62.9
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1202.6 952 67.3
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1195.6 1037 61.9
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1189.1 1035 61.8
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1188.7 1051 61.9
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1125.5 1058 60.0
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1124.4 1035 58.8
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1112.8 1036 58.8
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1112.8 1036 58.8
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 0.0e+00 1105.5 1152 55.7
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1105.1 1036 58.6
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1100.1 1035 58.5
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1099.7 1037 58.5
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1097.0 1034 58.2
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.6e-309 1066.2 1094 56.4
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 1.4e-305 1053.1 814 69.7
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.2e-301 1040.0 1087 55.0
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 8.4e-287 990.7 810 66.8
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 3.7e-282 975.3 664 75.8
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.4e-265 920.2 1096 50.7
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.5e-254 883.6 1093 48.0
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 4.2e-254 882.1 628 70.4
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 3.7e-250 869.0 1081 49.1
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 7.7e-248 861.3 1044 49.4
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 3.2e-238 829.3 938 54.4
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 7.2e-238 828.2 1091 46.9
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 8.3e-226 788.1 604 69.4
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 4.0e-212 742.7 572 69.6
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 3.1e-196 689.9 949 44.8
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 2.0e-187 660.6 431 78.9
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 1.9e-185 654.1 581 61.8
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 2.4e-177 627.1 439 73.8
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.7e-176 623.6 582 61.7
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.0e-167 595.1 433 72.1
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 1.5e-155 554.7 363 75.8
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.0e-114 416.8 422 59.7
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 1.6e-96 358.6 325 63.4
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 4.7e-96 357.1 272 68.8
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 9.2e-92 342.8 235 79.1
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 2.7e-67 261.5 282 54.3
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 1.8e-63 248.8 231 62.8
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 6.3e-40 170.6 115 77.4
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 2.0e-38 165.6 238 42.0
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 3.4e-38 164.9 118 71.2
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 5.7e-33 147.5 224 43.3
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 1.3e-32 146.4 136 56.6
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.8e-31 142.5 160 48.8
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 2.1e-27 129.0 191 44.5
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 6.7e-26 124.0 86 67.4
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 3.5e-22 111.7 76 69.7
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 3.8e-21 108.2 130 46.2
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 6.5e-21 107.5 87 65.5
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.7e-19 102.1 96 55.2
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 2.3e-18 99.0 61 72.1
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 8.8e-18 97.1 61 70.5
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 8.8e-18 97.1 61 70.5
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 1.5e-17 96.3 134 48.5
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 3.3e-17 95.1 92 52.2
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 4.4e-17 94.7 61 68.9
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 7.5e-17 94.0 58 70.7
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 2.2e-16 92.4 71 70.4
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 2.4e-15 89.0 75 58.7
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.4e-10 73.2 101 46.5
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 4.4e-09 68.2 253 28.9
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 6.3e-08 64.3 32 93.8


User provided reference genes

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