Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 0.0e+00 2273.8 1164 100.0
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 0.0e+00 2094.3 1164 92.2
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 0.0e+00 1178.3 1169 55.3
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 0.0e+00 1125.5 1164 52.2
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 0.0e+00 1107.8 1165 52.6
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 0.0e+00 1106.7 1170 51.0
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 0.0e+00 1103.2 1170 50.9
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 0.0e+00 1093.2 1169 51.8
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 0.0e+00 1087.4 1169 51.9
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 0.0e+00 1087.0 1170 52.0
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 5.6e-308 1061.2 1177 50.8
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.8e-301 1039.6 1168 49.8
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 3.5e-294 1015.4 1167 49.4
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.2e-289 1000.3 1168 47.4
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 2.5e-287 992.6 1201 46.5
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 5.1e-285 984.9 1201 46.2
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.2e-281 973.8 1172 47.9
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 5.7e-276 954.9 1173 46.2
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 6.3e-275 951.4 1154 47.3
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.2e-270 937.2 1097 48.8
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.2e-265 920.6 1164 47.0
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.2e-264 916.4 1165 46.3
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 2.9e-264 916.0 1161 45.7
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 2.5e-263 912.9 1164 45.1
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.6e-262 910.2 1186 45.4
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.0e-261 906.0 1167 45.3
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 5.2e-261 905.2 1200 45.1
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 6.8e-261 904.8 1173 46.3
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 3.8e-256 889.0 1162 44.7
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 9.4e-255 884.4 1103 47.0
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 4.7e-254 882.1 1170 45.1
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 9.8e-252 874.4 981 50.7
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 3.1e-250 869.4 1165 44.6
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-249 867.1 1171 45.0
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 4.5e-249 865.5 1188 44.0
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.0e-246 854.7 1170 42.2
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.8e-245 853.6 1173 43.5
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.9e-245 851.3 1170 41.9
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.2e-244 850.9 1173 43.0
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.4e-244 849.4 1163 43.3
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 3.3e-239 832.8 1162 42.5
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 5.6e-239 832.0 1163 44.3
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 9.2e-234 814.7 1268 40.8
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 5.6e-231 805.4 1176 42.2
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 5.2e-229 798.9 1180 42.6
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 2.0e-228 797.0 1173 42.9
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 9.8e-228 794.7 940 47.9
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 8.3e-227 791.6 1051 45.1
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 6.2e-222 775.4 1000 44.7
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 3.1e-221 773.1 1170 41.2
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.4e-220 769.2 1170 40.5
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 1.3e-216 757.7 1165 38.8
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 8.6e-216 755.0 1174 38.4
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 7.3e-215 751.9 1165 38.9
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 7.3e-215 751.9 1174 40.3
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 9.6e-215 751.5 909 47.3
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 1.1e-213 748.0 1165 38.6
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.8e-213 747.3 1180 39.3
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.6e-212 743.4 1185 38.8
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.7e-211 740.7 1168 38.9
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 2.2e-211 740.3 1165 39.1
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.4e-210 737.6 1169 40.1
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 5.4e-210 735.7 1165 38.6
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 2.7e-209 733.4 1165 38.8
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 2.7e-209 733.4 1171 38.1
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.7e-208 730.7 1180 39.1
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 6.6e-208 728.8 1159 38.4
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.3e-206 724.5 1178 38.2
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.6e-206 724.2 1180 38.4
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.6e-206 724.2 1180 38.4
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.6e-206 724.2 1178 38.1
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 5.8e-204 715.7 1170 37.4
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 2.9e-203 713.4 1185 38.4
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.4e-202 710.3 1192 38.6
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.9e-199 700.7 1167 37.2
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.6e-198 696.4 1174 38.2
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 5.8e-196 689.1 1168 37.3
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 1.7e-195 687.6 1170 37.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 2.1e-193 680.6 1190 38.0
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 4.3e-191 672.9 1217 36.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 4.5e-188 662.9 1173 36.1
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 3.2e-186 656.8 1174 36.5
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.5e-180 636.3 974 39.9
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 5.8e-180 636.0 1172 35.2
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.2e-178 629.8 897 41.8
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.5e-175 621.3 1117 35.9
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 9.4e-170 602.1 1169 36.0
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 1.5e-167 594.7 1174 35.4
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 2.4e-157 560.8 1148 35.2
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.6e-156 558.1 967 37.4
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 1.2e-153 548.5 1224 32.9
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.8e-141 508.1 940 38.4
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 1.7e-139 501.5 1263 30.0
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 7.5e-135 486.1 1251 29.3
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.5e-132 476.9 658 40.9
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 3.7e-118 430.6 902 32.3
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 8.1e-105 386.3 808 34.9
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 5.8e-95 353.6 446 47.1
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 6.4e-86 323.6 305 58.7
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.6e-84 318.9 302 58.3
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 8.7e-83 313.2 301 58.8
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 3.3e-82 311.2 301 58.5
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 9.6e-82 309.7 302 56.0
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 1.4e-80 305.8 431 39.4
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.9e-80 303.5 301 55.8
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 1.3e-78 299.3 1284 24.8
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 8.4e-78 296.6 1280 24.5
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 2.6e-71 275.0 274 56.2
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.7e-70 272.3 301 53.8
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.7e-68 265.0 238 58.0
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 3.9e-67 261.2 303 48.8
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.1e-66 259.6 238 58.4
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.5e-66 259.2 303 48.5
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 6.9e-64 250.4 357 43.4
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 6.7e-59 233.8 1136 25.3
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 5.7e-58 230.7 176 67.0
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 9.1e-56 223.4 203 57.6
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 4.5e-55 221.1 425 34.4
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 2.1e-52 212.2 176 60.8
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.8e-51 209.1 509 32.0
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.1e-50 206.5 172 63.4
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.3e-49 203.0 295 41.4
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.3e-49 200.7 172 61.6
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 7.7e-47 193.7 188 53.2
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.9e-46 191.8 169 61.5
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 9.7e-42 176.8 317 34.4
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 3.5e-39 168.3 840 24.9
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 4.4e-34 151.4 412 28.4
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 7.0e-32 144.1 226 38.1
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 4.5e-31 141.4 242 36.4
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.5e-29 135.6 318 33.6
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.1e-28 132.5 255 33.3
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 3.6e-28 131.7 158 52.5
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.5e-23 115.2 115 55.7
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.3e-22 112.5 117 53.8
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.8e-22 111.7 424 26.2
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.3e-17 96.7 98 58.2
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 8.3e-17 94.0 101 55.4
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 7.3e-13 80.9 83 57.8
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 2.1e-12 79.3 97 49.5
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 2.3e-11 75.9 97 45.4
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 2.3e-11 75.9 101 47.5
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 8.9e-11 73.9 129 44.2
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.2e-10 73.6 45 73.3
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 1.2e-10 73.6 49 67.3
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 2.6e-10 72.4 45 71.1
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.2e-07 63.5 129 34.9
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 4.6e-07 61.6 117 32.5


User provided reference genes

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