Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.4e-63 246.1 125 100.0
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.7e-46 188.7 118 84.7
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.0e-34 150.2 118 67.8
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.6e-33 145.6 124 62.9
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 5.7e-33 144.4 123 66.7
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 5.7e-33 144.4 117 66.7
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.2e-32 142.5 114 68.4
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 2.8e-32 142.1 118 66.1
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 4.9e-32 141.4 117 65.8
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 6.3e-32 141.0 122 60.7
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-31 139.8 114 67.5
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.1e-31 138.7 114 66.7
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.1e-31 138.7 125 56.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.1e-31 138.3 120 62.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.6e-30 136.3 119 62.2
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.6e-30 136.3 120 61.7
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.7e-30 135.6 120 61.7
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 7.8e-30 134.0 123 57.7
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.7e-29 132.9 122 57.4
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.8e-29 131.7 119 63.0
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 5.0e-29 131.3 122 59.0
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-28 130.2 122 59.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.5e-28 129.0 122 59.8
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 3.3e-28 128.6 127 57.5
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 4.3e-28 128.3 123 52.8
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 5.6e-28 127.9 123 52.8
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 7.3e-28 127.5 121 59.5
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 7.3e-28 127.5 121 62.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 9.5e-28 127.1 125 55.2
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.8e-27 125.6 127 59.8
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.6e-27 125.2 124 54.0
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 4.7e-27 124.8 121 56.2
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 6.1e-27 124.4 118 56.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.1e-27 124.4 124 57.3
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.0e-26 123.6 120 59.2
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.0e-26 123.6 121 59.5
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.0e-26 123.6 118 56.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-26 123.2 135 57.0
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.0e-26 122.1 121 60.3
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.0e-26 122.1 116 59.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 5.2e-26 121.3 128 58.6
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 6.8e-26 120.9 115 54.8
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 8.9e-26 120.6 136 50.0
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.0e-25 119.4 116 54.3
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.6e-25 119.0 115 55.7
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 7.5e-25 117.5 114 53.5
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 7.5e-25 117.5 135 49.6
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.7e-24 116.3 132 50.0
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.9e-24 115.5 123 48.0
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 6.4e-24 114.4 114 49.1
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-23 113.6 121 53.7
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.1e-23 113.6 117 56.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.4e-23 113.2 133 49.6
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.4e-23 113.2 121 56.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.9e-23 112.8 125 48.0
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.4e-23 112.5 121 51.2
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.4e-23 112.5 121 51.2
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.2e-23 112.1 114 52.6
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 3.2e-23 112.1 116 48.3
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 9.2e-23 110.5 127 48.0
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.6e-22 109.8 125 44.8
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.6e-22 109.8 125 52.0
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 4.6e-22 108.2 111 55.0
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.0e-22 107.8 118 46.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 2.3e-21 105.9 112 53.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 3.0e-21 105.5 141 47.5
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-21 105.1 119 55.5
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-21 105.1 119 55.5
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 3.9e-21 105.1 113 55.8
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.6e-21 104.4 119 54.6
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.6e-21 104.4 128 50.8
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.1e-20 103.6 127 49.6
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.1e-20 103.6 114 50.9
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.9e-20 102.8 115 53.0
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.5e-20 102.4 115 55.7
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-20 102.1 119 53.8
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 3.3e-20 102.1 147 42.2
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.3e-20 101.7 112 53.6
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.6e-20 101.3 118 48.3
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 5.6e-20 101.3 120 45.0
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 7.3e-20 100.9 125 43.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 9.5e-20 100.5 125 43.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.2e-19 100.1 122 47.5
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-19 100.1 120 47.5
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.2e-19 100.1 128 43.8
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.2e-19 100.1 128 43.8
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.1e-19 99.4 115 51.3
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.1e-19 99.4 127 48.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.8e-19 99.0 118 46.6
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.8e-19 99.0 118 46.6
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.7e-19 98.2 121 43.8
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.7e-19 98.2 117 53.0
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 6.2e-19 97.8 121 47.1
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 8.0e-19 97.4 130 44.6
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 8.0e-19 97.4 118 46.6
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.1e-18 97.1 120 43.3
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.1e-18 97.1 137 43.1
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.1e-18 97.1 106 50.9
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.8e-18 96.3 116 50.9
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.8e-18 96.3 116 50.9
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.8e-18 96.3 116 51.7
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.3e-18 95.9 125 47.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.1e-18 95.5 97 57.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.1e-18 95.5 123 48.0
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 4.0e-18 95.1 109 45.9
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.2e-18 94.7 109 45.9
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 6.8e-18 94.4 119 51.3
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 6.8e-18 94.4 111 52.3
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 8.9e-18 94.0 116 50.9
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.2e-17 93.6 114 53.5
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.5e-17 93.2 111 48.6
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.6e-17 92.4 111 48.6
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.6e-17 92.4 117 50.4
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 4.4e-17 91.7 109 46.8
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 7.5e-17 90.9 115 49.6
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.5e-17 90.9 98 59.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.8e-17 90.5 111 45.9
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.7e-16 89.7 142 40.8
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-16 89.7 117 43.6
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.2e-16 89.4 113 50.4
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 2.2e-16 89.4 113 50.4
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.2e-16 89.4 113 50.4
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.2e-16 89.4 115 48.7
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 8.3e-16 87.4 115 50.4
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 8.3e-16 87.4 126 45.2
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 8.3e-16 87.4 136 39.7
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 8.3e-16 87.4 118 42.4
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.1e-15 87.0 129 45.7
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.1e-15 87.0 123 42.3
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.4e-15 86.7 114 46.5
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.4e-15 86.7 113 49.6
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.4e-15 86.7 113 49.6
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.4e-15 86.7 120 45.8
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.4e-15 86.7 74 59.5
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 2.4e-15 85.9 135 38.5
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 4.1e-15 85.1 133 41.4
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 5.4e-15 84.7 89 52.8
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 7.0e-15 84.3 116 48.3
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 9.2e-15 84.0 116 42.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.1e-14 82.8 137 40.9
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.7e-13 79.7 116 41.4
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.0e-13 79.0 126 42.9
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 6.6e-13 77.8 136 38.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.1e-12 77.0 130 46.9
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.9e-12 76.3 118 44.9
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.9e-12 76.3 113 42.5
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.5e-12 75.9 154 37.7
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 4.3e-12 75.1 125 40.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 6.2e-11 71.2 80 51.2
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 6.2e-11 71.2 80 51.2
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 1.4e-10 70.1 94 44.7
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.6e-09 65.9 79 49.4
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.4e-09 65.5 126 36.5
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.3e-08 63.5 131 36.6
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 8.3e-08 60.8 143 37.8
Cpa.g.sc95.59 Carica papaya HOM05D001798 ORTHO05D005040 3.2e-07 58.9 106 39.6
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 3.2e-07 58.9 121 37.2
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 4.1e-07 58.5 40 67.5
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.1e-07 58.5 93 39.8
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 5.4e-07 58.2 160 29.4
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 9.2e-07 57.4 144 28.5
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 3.5e-06 55.5 126 31.7
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 3.5e-06 55.5 100 36.0
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.0e-06 54.7 117 33.3
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 7.8e-06 54.3 163 29.4


User provided reference genes

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