Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 1.8e-46 188.7 85 100.0
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 5.2e-46 187.2 85 98.8
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.6e-42 174.1 82 91.5
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.6e-42 174.1 82 91.5
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 4.6e-42 174.1 82 91.5
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 1.0e-41 172.9 82 92.7
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 1.0e-41 172.9 82 91.5
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.7e-41 172.2 81 90.1
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 3.0e-41 171.4 82 91.5
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 3.0e-41 171.4 82 91.5
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 3.9e-41 171.0 84 86.9
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 5.1e-41 170.6 82 87.8
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 6.6e-41 170.2 84 86.9
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 8.7e-41 169.9 84 85.7
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 1.1e-40 169.5 82 90.2
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 1.5e-40 169.1 82 90.2
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 1.5e-40 169.1 82 90.2
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.9e-40 168.7 82 89.0
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 2.5e-40 168.3 82 87.8
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 2.5e-40 168.3 82 87.8
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 2.5e-40 168.3 82 90.2
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 3.3e-40 167.9 82 87.8
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 4.3e-40 167.5 82 87.8
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 5.6e-40 167.2 81 87.7
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 5.6e-40 167.2 82 89.0
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 5.6e-40 167.2 82 89.0
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 7.3e-40 166.8 82 86.6
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 7.3e-40 166.8 82 85.4
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 9.6e-40 166.4 82 86.6
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 1.3e-39 166.0 82 86.6
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 1.6e-39 165.6 84 85.7
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.6e-39 165.6 82 87.8
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 2.1e-39 165.2 82 86.6
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 2.1e-39 165.2 82 87.8
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.8e-39 164.9 82 86.6
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 2.8e-39 164.9 76 90.8
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 6.2e-39 163.7 82 86.6
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 6.2e-39 163.7 82 87.8
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 8.1e-39 163.3 82 87.8
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 8.1e-39 163.3 83 85.5
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 8.1e-39 163.3 83 85.5
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 8.1e-39 163.3 82 85.4
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 1.1e-38 162.9 82 85.4
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 1.8e-38 162.2 84 82.1
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.8e-38 162.2 79 87.3
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 1.8e-38 162.2 83 84.3
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 2.4e-38 161.8 83 81.9
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 3.1e-38 161.4 82 86.6
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 5.3e-38 160.6 81 84.0
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 5.3e-38 160.6 82 84.1
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 6.9e-38 160.2 82 84.1
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 6.9e-38 160.2 82 84.1
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 9.0e-38 159.8 82 86.6
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.5e-37 159.1 82 84.1
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 4.5e-37 157.5 82 80.5
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 4.5e-37 157.5 82 82.9
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 4.5e-37 157.5 82 82.9
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 4.5e-37 157.5 83 81.9
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 5.8e-37 157.1 82 82.9
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 7.6e-37 156.8 83 84.3
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 1.7e-36 155.6 82 84.1
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 2.2e-36 155.2 82 82.9
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 2.2e-36 155.2 82 84.1
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.2e-36 155.2 82 84.1
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.2e-36 155.2 82 84.1
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 2.9e-36 154.8 81 84.0
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 3.8e-36 154.5 79 84.8
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 6.4e-36 153.7 82 82.9
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 6.4e-36 153.7 82 82.9
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 6.4e-36 153.7 81 82.7
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 6.4e-36 153.7 82 82.9
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 6.4e-36 153.7 81 82.7
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 6.4e-36 153.7 81 82.7
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 6.4e-36 153.7 82 82.9
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 6.4e-36 153.7 83 83.1
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 8.4e-36 153.3 81 84.0
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.1e-35 152.9 83 81.9
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 1.4e-35 152.5 81 82.7
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.9e-35 152.1 79 82.3
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.9e-35 152.1 84 82.1
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 2.4e-35 151.8 77 83.1
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 2.4e-35 151.8 77 83.1
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 2.4e-35 151.8 77 83.1
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 2.4e-35 151.8 77 83.1
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 3.2e-35 151.4 81 80.2
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 3.2e-35 151.4 100 69.0
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 2.7e-34 148.3 77 83.1
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 3.5e-34 147.9 81 81.5
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 7.9e-34 146.7 82 80.5
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.0e-33 146.4 84 78.6
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 1.0e-33 146.4 79 79.7
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 3.0e-33 144.8 75 81.3
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 6.7e-33 143.7 73 83.6
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 7.4e-32 140.2 81 74.1
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.8e-31 138.3 84 75.0
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 2.4e-30 135.2 73 76.7
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 2.0e-29 132.1 82 73.2
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.3e-28 129.4 63 85.7
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 2.2e-28 128.6 59 91.5
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 6.4e-28 127.1 59 91.5
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 1.9e-27 125.6 60 81.7
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 5.5e-27 124.0 59 88.1
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 3.9e-25 117.9 58 87.9
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 2.4e-22 108.6 50 92.0
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 7.6e-21 103.6 57 75.4
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 1.9e-19 99.0 64 65.6
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 4.1e-14 81.3 58 62.1
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 9.0e-14 80.1 61 57.4
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.2e-10 69.7 35 82.9
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 6.1e-10 67.4 32 87.5
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.0e-09 65.1 35 74.3
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 6.7e-09 63.9 36 80.6
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 2.2e-07 58.9 35 74.3


User provided reference genes

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