Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 6.9e-224 780.4 418 100.0
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 6.3e-177 624.4 374 93.3
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 6.1e-164 581.3 374 86.9
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 8.9e-163 577.4 374 87.7
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 7.5e-162 574.3 377 86.7
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 2.0e-159 566.2 375 84.0
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 5.9e-159 564.7 374 85.3
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.3e-158 563.5 376 84.3
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.1e-157 560.5 384 84.1
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.1e-157 560.5 367 87.5
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 5.6e-157 558.1 366 85.2
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 5.6e-157 558.1 384 81.8
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 9.5e-157 557.4 384 81.5
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 9.5e-157 557.4 372 83.1
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 4.7e-156 555.1 374 84.8
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 6.2e-156 554.7 374 82.1
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 1.0e-155 553.9 384 82.0
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 6.8e-155 551.2 378 82.0
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.8e-155 551.2 374 84.5
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.0e-154 549.7 374 84.2
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 3.4e-154 548.9 374 80.5
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 3.4e-154 548.9 375 82.9
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 4.4e-154 548.5 378 81.7
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 4.4e-154 548.5 374 81.6
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 5.8e-154 548.1 374 84.2
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 9.8e-154 547.4 384 79.9
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 2.2e-153 546.2 376 84.0
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 2.2e-153 546.2 387 81.7
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 2.9e-153 545.8 385 79.7
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 3.7e-153 545.4 374 81.0
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 4.9e-153 545.0 374 80.7
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.2e-151 540.4 370 81.6
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 3.5e-151 538.9 377 80.6
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 6.0e-151 538.1 384 78.4
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 6.0e-151 538.1 370 80.5
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.7e-150 536.6 384 79.4
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 2.3e-150 536.2 370 80.3
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 3.0e-150 535.8 368 81.8
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 2.1e-148 529.6 385 80.3
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 8.1e-148 527.7 374 81.8
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 3.1e-147 525.8 362 82.9
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 3.1e-147 525.8 384 76.6
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 4.4e-146 521.9 384 78.4
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 5.8e-146 521.5 380 76.8
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.9e-144 516.5 363 82.9
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.2e-143 513.8 365 77.8
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.2e-143 513.8 354 79.9
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.5e-143 512.3 389 74.0
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 3.9e-142 508.8 391 76.5
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 8.6e-142 507.7 385 77.1
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 1.9e-141 506.5 350 80.6
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 5.6e-141 505.0 379 77.0
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 7.3e-141 504.6 372 77.2
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 7.3e-141 504.6 351 82.1
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 9.5e-141 504.2 367 79.0
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.2e-140 503.8 366 79.0
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 2.1e-140 503.1 374 77.0
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 2.1e-140 503.1 317 90.2
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 3.6e-140 502.3 387 75.7
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.1e-139 500.7 388 75.3
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.1e-139 500.7 388 75.3
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.1e-139 500.7 366 79.8
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.4e-139 500.4 382 77.0
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.3e-139 499.6 374 75.1
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 6.8e-139 498.0 374 76.7
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.5e-138 496.9 374 77.5
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.6e-138 496.1 376 75.3
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.3e-137 493.8 387 74.9
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 2.2e-137 493.0 363 78.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 2.9e-137 492.7 363 78.5
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.9e-137 492.7 365 78.1
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 3.8e-137 492.3 385 74.0
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.1e-136 490.7 344 79.7
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.4e-136 489.6 390 74.4
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 2.4e-136 489.6 371 76.0
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 5.4e-136 488.4 367 75.7
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 5.4e-136 488.4 381 74.8
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.7e-135 486.1 346 78.0
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 7.8e-135 484.6 343 80.8
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 7.8e-135 484.6 408 72.5
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.0e-134 484.2 387 74.9
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 3.0e-134 482.6 342 80.7
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 8.6e-134 481.1 342 80.4
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 9.6e-133 477.6 410 69.8
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 2.1e-132 476.5 373 73.5
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 3.6e-132 475.7 367 75.7
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 4.7e-132 475.3 367 75.2
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.4e-131 473.0 360 75.6
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.2e-130 470.7 352 78.7
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 7.6e-130 468.0 350 76.9
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.4e-128 463.8 365 73.2
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.6e-127 460.3 361 72.0
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 3.5e-127 459.1 368 73.6
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.6e-127 458.8 352 74.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 6.0e-127 458.4 364 73.1
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.3e-126 457.2 363 71.6
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.3e-126 456.4 374 72.5
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.5e-125 453.8 355 75.5
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 3.3e-125 452.6 362 73.5
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 4.8e-124 448.7 355 73.0
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.1e-123 447.6 362 71.0
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 5.3e-123 445.3 366 69.9
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 5.3e-123 445.3 362 71.8
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 5.8e-122 441.8 384 67.4
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.7e-121 440.3 370 69.5
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 8.4e-121 438.0 358 72.3
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 2.4e-120 436.4 371 71.2
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 5.4e-120 435.3 346 73.4
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 7.1e-120 434.9 363 70.8
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 6.0e-119 431.8 355 71.8
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 6.0e-119 431.8 355 71.8
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 1.3e-118 430.6 293 82.3
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 2.3e-118 429.9 388 63.4
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 5.1e-118 428.7 342 73.7
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.5e-117 427.2 292 84.6
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 9.6e-117 424.5 352 70.7
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 3.7e-116 422.5 369 69.6
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 8.1e-116 421.4 353 67.4
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.9e-112 410.2 379 66.8
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.1e-108 396.7 330 70.6
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.1e-108 396.7 345 63.2
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.2e-105 386.7 361 60.1
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 3.8e-105 386.0 388 62.9
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 3.2e-104 382.9 268 80.2
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.8e-102 377.1 218 93.6
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.3e-101 372.5 368 58.4
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.7e-101 372.1 290 74.5
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 9.7e-101 371.3 272 76.5
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 7.6e-98 361.7 329 61.7
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.7e-95 353.2 314 61.8
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.3e-94 350.9 346 56.1
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 8.7e-94 348.2 357 57.1
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 1.5e-93 347.4 267 74.9
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.3e-92 344.4 303 71.9
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.5e-90 337.4 224 85.3
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.5e-90 335.9 374 52.9
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 1.4e-86 324.3 346 55.8
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 7.2e-80 302.0 310 60.6
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 2.3e-70 270.4 172 84.3
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.0e-50 204.1 131 85.5
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 1.9e-48 197.6 119 88.2
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 9.5e-48 195.3 140 77.9
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.5e-42 176.8 118 82.2
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 6.4e-36 156.0 97 83.5
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 2.3e-33 147.5 142 66.9
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.6e-31 140.2 105 71.4
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 9.5e-24 115.5 81 79.0
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.2e-18 98.6 81 67.9
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.1e-18 97.8 130 50.0
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 3.5e-18 97.1 58 93.1
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.1e-16 92.0 53 96.2
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 2.1e-15 87.8 93 53.8
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 4.7e-15 86.7 79 59.5
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 8.1e-15 85.9 70 64.3
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 8.1e-15 85.9 70 64.3
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.7e-12 78.2 97 52.6
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.7e-12 78.2 117 38.5
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 2.9e-12 77.4 99 52.5
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 2.9e-12 77.4 42 90.5
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 8.4e-12 75.9 68 67.6
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 1.5e-08 65.1 38 94.7
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 5.6e-08 63.2 47 66.0


User provided reference genes

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