Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0078900 Salix brachista HOM05D007262 ORTHO05D008524 4.3e-127 458.0 227 100.0
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.7e-14 84.0 87 47.1
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 4.9e-14 82.4 112 40.2
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 1.1e-13 81.3 102 42.2
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.4e-13 80.1 74 50.0
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.4e-13 80.1 74 50.0
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 2.4e-13 80.1 74 50.0
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 3.5e-12 76.3 77 49.4
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 5.9e-12 75.5 106 39.6
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 7.8e-12 75.1 98 41.8
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 1.3e-11 74.3 64 50.0
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.5e-10 70.9 73 46.6
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 1.9e-10 70.5 186 33.3
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 3.3e-10 69.7 87 46.0
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 3.3e-10 69.7 89 41.6
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 3.3e-10 69.7 78 42.3
Cpa.g.sc233.5 Carica papaya HOM05D018436 ORTHO05D008524 4.3e-10 69.3 83 48.2
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 4.3e-10 69.3 77 48.1
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 9.5e-10 68.2 68 48.5
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 9.5e-10 68.2 73 46.6
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.2e-09 67.8 87 36.8
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 1.2e-09 67.8 69 46.4
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.2e-09 67.8 64 51.6
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 2.1e-09 67.0 77 46.8
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 2.8e-09 66.6 66 50.0
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 2.8e-09 66.6 83 42.2
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 3.6e-09 66.2 94 40.4
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 4.7e-09 65.9 75 50.7
QL02p097844 Quercus lobata HOM05D007262 ORTHO05D008524 1.0e-08 64.7 130 35.4
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 1.4e-08 64.3 90 42.2
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.4e-08 64.3 95 38.9
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.4e-08 64.3 91 40.7
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 3.1e-08 63.2 72 43.1
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 4.0e-08 62.8 79 44.3
COL.COLO4_28647 Corchorus olitorius HOM05D015664 ORTHO05D008524 6.8e-08 62.0 83 43.4
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 6.8e-08 62.0 80 47.5
Prupe.1G085100 Prunus persica HOM05D015664 ORTHO05D008524 6.8e-08 62.0 118 37.3
Atru.chr7.610 Acer truncatum HOM05D015664 ORTHO05D008524 8.9e-08 61.6 59 52.5
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 8.9e-08 61.6 92 41.3
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 2.0e-07 60.5 71 43.7
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.0e-07 60.5 124 35.5
COL.COLO4_37718 Corchorus olitorius HOM05D018436 ORTHO05D008524 2.0e-07 60.5 82 40.2
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.6e-07 60.1 62 46.8
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 2.6e-07 60.1 100 36.0
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 3.4e-07 59.7 82 41.5
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 3.4e-07 59.7 90 42.2
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 4.4e-07 59.3 198 31.8
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 7.5e-07 58.5 91 39.6
Eucgr.C00152 Eucalyptus grandis HOM05D007262 ORTHO05D008524 9.8e-07 58.2 118 33.1
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.3e-06 57.8 99 39.4
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.7e-06 57.4 120 35.0
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 1.7e-06 57.4 120 35.0
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 1.7e-06 57.4 120 35.0
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.7e-06 57.4 120 35.0
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.7e-06 57.4 63 42.9
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.7e-06 57.4 74 44.6
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 1.7e-06 57.4 81 43.2
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 2.2e-06 57.0 73 38.4
CsaV3_1G031630 Cucumis sativus L. HOM05D015664 ORTHO05D008524 2.9e-06 56.6 66 45.5
Gohir.D08G093600 Gossypium hirsutum HOM05D018436 ORTHO05D025173 2.9e-06 56.6 86 37.2
Gorai.004G099200 Gossypium raimondii HOM05D018436 ORTHO05D025173 2.9e-06 56.6 86 37.2
MELO3C017459.2 Cucumis melo HOM05D015664 ORTHO05D008524 3.7e-06 56.2 66 45.5
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 3.7e-06 56.2 178 30.9
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 4.9e-06 55.8 85 37.6
Ciclev10009553m.g Citrus clementina HOM05D007262 ORTHO05D008524 4.9e-06 55.8 97 39.2
COL.COLO4_32474 Corchorus olitorius HOM05D018436 ORTHO05D025173 4.9e-06 55.8 91 37.4
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 8.3e-06 55.1 89 37.1
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 8.3e-06 55.1 74 36.5


User provided reference genes

Program Settings