Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 9.8e-111 403.7 233 100.0
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 3.7e-49 199.1 178 67.4
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.3e-46 190.7 157 70.7
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 7.9e-44 181.4 157 63.7
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 3.0e-35 152.9 158 55.1
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 9.7e-34 147.9 158 53.2
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.1e-32 144.4 171 50.3
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 6.9e-32 141.7 157 57.3
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 9.1e-32 141.4 174 55.7
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 9.1e-32 141.4 163 58.9
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.2e-31 141.0 161 57.8
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 1.5e-31 140.6 158 61.4
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.0e-31 140.2 164 59.8
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 3.4e-31 139.4 166 59.0
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 7.7e-31 138.3 161 57.1
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.0e-30 137.9 166 59.0
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 1.3e-30 137.5 166 57.2
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.7e-30 137.1 160 56.9
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 2.2e-30 136.7 156 52.6
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.2e-30 136.7 156 52.6
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 2.9e-30 136.3 160 56.9
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 8.5e-30 134.8 159 50.3
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 4.2e-29 132.5 162 55.6
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 5.5e-29 132.1 157 56.7
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 7.2e-29 131.7 159 49.7
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 1.6e-28 130.6 156 50.0
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.6e-28 130.6 157 51.6
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 2.7e-28 129.8 157 51.6
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 3.6e-28 129.4 159 49.1
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 4.7e-28 129.0 165 47.9
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 4.7e-28 129.0 156 50.6
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 6.1e-28 128.6 156 50.0
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 6.1e-28 128.6 156 50.0
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 6.1e-28 128.6 159 49.7
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 6.1e-28 128.6 159 49.1
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 7.9e-28 128.3 156 50.6
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 1.4e-27 127.5 155 51.0
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 1.8e-27 127.1 155 50.3
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 1.8e-27 127.1 156 54.5
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 2.3e-27 126.7 156 50.0
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 2.3e-27 126.7 156 50.0
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 2.3e-27 126.7 156 57.7
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.3e-27 126.7 158 60.8
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 3.0e-27 126.3 159 52.8
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 3.9e-27 125.9 156 50.0
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 5.1e-27 125.6 156 53.2
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 8.8e-27 124.8 156 48.1
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 8.8e-27 124.8 158 60.1
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 8.8e-27 124.8 158 60.1
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 1.1e-26 124.4 165 47.3
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.0e-26 123.6 156 48.1
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 2.0e-26 123.6 168 54.2
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 2.6e-26 123.2 156 48.7
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 9.7e-26 121.3 155 49.0
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 9.7e-26 121.3 156 46.2
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.3e-25 120.9 155 49.0
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.3e-25 120.9 181 48.6
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.7e-25 120.6 158 46.2
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 2.2e-25 120.2 157 47.1
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 2.8e-25 119.8 157 45.9
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 3.7e-25 119.4 156 46.8
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 8.2e-25 118.2 159 45.9
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.4e-24 117.5 157 49.0
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.4e-24 117.5 157 55.4
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 1.8e-24 117.1 157 58.0
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 3.1e-24 116.3 156 44.9
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 4.1e-24 115.9 158 48.1
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 5.3e-24 115.5 157 58.6
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 2.0e-23 113.6 160 45.6
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 2.6e-23 113.2 160 45.6
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 3.4e-23 112.8 162 46.3
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 5.9e-23 112.1 168 51.2
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 5.9e-23 112.1 160 45.0
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 1.3e-22 110.9 156 46.8
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.3e-22 110.9 157 53.5
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.2e-22 110.2 157 43.9
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 5.0e-22 109.0 170 50.0
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 6.5e-22 108.6 162 50.6
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 2.5e-21 106.7 160 45.6
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 4.2e-21 105.9 157 57.3
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 7.2e-21 105.1 162 45.7
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 9.4e-21 104.8 170 42.9
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 1.2e-20 104.4 187 38.0
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 1.2e-20 104.4 155 43.9
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.6e-20 104.0 157 49.0
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.6e-20 104.0 157 49.7
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.1e-20 103.6 156 52.6
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 2.1e-20 103.6 153 43.1
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 2.7e-20 103.2 157 42.0
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 4.7e-20 102.4 157 48.4
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 6.1e-20 102.1 160 50.0
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 6.1e-20 102.1 160 42.5
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 8.0e-20 101.7 157 44.6
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.4e-19 100.9 157 43.3
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.8e-19 100.5 169 36.1
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.3e-19 100.1 157 48.4
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 3.9e-19 99.4 158 45.6
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 5.2e-19 99.0 156 39.7
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.6e-18 96.7 162 42.6
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 2.6e-18 96.7 155 41.3
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 3.3e-18 96.3 157 47.1
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 9.7e-18 94.7 164 44.5
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 9.7e-18 94.7 171 37.4
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 9.7e-18 94.7 170 37.6
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.3e-17 94.4 161 38.5
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 1.7e-17 94.0 167 41.3
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 2.8e-17 93.2 157 38.9
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 3.7e-17 92.8 153 38.6
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 3.7e-17 92.8 153 39.2
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 4.8e-17 92.4 187 35.8
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 6.3e-17 92.0 156 46.8
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.4e-16 90.9 158 39.2
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.4e-16 90.9 158 39.2
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.8e-16 90.5 187 35.8
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 1.8e-16 90.5 166 38.0
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 2.4e-16 90.1 152 44.1
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.4e-16 90.1 175 38.3
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 3.1e-16 89.7 162 38.9
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 4.1e-16 89.4 161 42.2
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 5.3e-16 89.0 171 36.3
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 9.1e-16 88.2 156 38.5
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 2.0e-15 87.0 159 36.5
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.6e-15 86.7 149 46.3
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 2.6e-15 86.7 153 35.9
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 2.6e-15 86.7 158 36.1
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 4.5e-15 85.9 152 37.5
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 7.7e-15 85.1 153 37.9
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 7.7e-15 85.1 183 34.4
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 1.0e-14 84.7 160 45.6
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.0e-14 84.7 166 44.0
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.2e-14 83.6 149 38.3
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 2.9e-14 83.2 153 38.6
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 6.5e-14 82.0 144 37.5
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.5e-13 80.9 164 44.5
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 2.5e-13 80.1 157 34.4
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 3.2e-13 79.7 151 39.7
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.2e-13 79.3 156 37.2
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 4.0e-11 72.8 147 36.1
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.3e-09 67.8 160 33.1
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 1.1e-08 64.7 70 47.1
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 2.4e-08 63.5 167 35.9
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 4.1e-08 62.8 70 45.7
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 1.2e-07 61.2 102 52.9
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.2e-07 61.2 73 42.5
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 2.0e-07 60.5 176 34.1
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 4.5e-07 59.3 72 43.1
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 1.3e-06 57.8 34 61.8
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 1.3e-06 57.8 154 30.5
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 2.9e-06 56.6 28 78.6


User provided reference genes

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