Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 0.0e+00 1237.6 687 100.0
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 0.0e+00 1115.1 687 92.1
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 6.2e-246 854.4 701 71.2
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 2.5e-239 832.4 712 70.1
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.9e-235 818.1 717 68.8
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.4e-234 816.6 712 68.7
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 6.0e-233 811.2 710 69.2
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 7.8e-233 810.8 716 67.3
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 3.0e-232 808.9 708 68.4
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 9.6e-231 803.9 713 67.2
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.1e-229 800.4 703 68.0
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-228 797.0 721 67.1
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 4.4e-228 795.0 758 64.5
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.7e-227 793.1 715 66.4
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.9e-227 792.3 729 66.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.1e-226 790.4 716 66.2
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 6.6e-224 781.2 718 66.0
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 6.6e-224 781.2 723 66.1
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.7e-224 780.8 713 65.9
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.1e-223 780.4 716 65.6
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.5e-220 770.0 721 65.5
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.5e-220 770.0 714 66.2
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.6e-220 769.2 715 64.8
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.6e-220 769.2 703 66.1
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 9.9e-220 767.3 714 66.1
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.3e-219 766.9 707 65.8
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 3.8e-219 765.4 709 65.6
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.9e-218 763.1 713 65.2
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 7.9e-217 757.7 710 64.5
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 3.3e-215 752.3 573 76.8
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 2.8e-214 749.2 716 64.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.8e-213 746.5 717 64.0
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.8e-213 746.5 717 64.3
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.9e-211 739.2 563 76.2
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.2e-209 733.8 730 63.3
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 8.7e-208 727.6 741 60.7
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 9.0e-205 717.6 716 62.2
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 6.5e-203 711.4 656 67.2
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.5e-202 709.5 721 61.7
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 4.2e-202 708.8 714 61.5
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 5.5e-202 708.4 742 60.5
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 9.3e-202 707.6 680 64.1
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 9.3e-202 707.6 768 58.3
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 9.3e-202 707.6 710 61.8
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 1.3e-200 703.7 727 60.5
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 3.3e-199 699.1 726 60.2
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.3e-198 697.2 726 60.3
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 2.8e-198 696.0 715 60.7
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.1e-197 694.1 712 61.0
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 6.9e-197 691.4 706 61.8
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 4.5e-196 688.7 712 59.7
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 1.2e-193 680.6 721 59.5
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.6e-193 680.2 723 59.9
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 6.1e-193 678.3 715 60.8
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.4e-192 677.2 725 59.6
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 2.3e-192 676.4 723 59.5
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 2.3e-192 676.4 723 59.1
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 3.9e-192 675.6 726 58.4
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 5.7e-191 671.8 722 59.0
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 5.7e-191 671.8 734 59.1
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.7e-190 670.2 701 60.9
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 3.1e-189 666.0 729 59.9
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 5.3e-189 665.2 707 59.1
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.2e-188 664.1 709 59.7
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 6.5e-187 658.3 689 59.8
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.4e-186 657.1 733 58.1
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.2e-185 654.1 718 57.8
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 2.7e-185 652.9 712 57.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.9e-185 651.4 730 58.8
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.9e-185 651.4 730 58.9
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 7.9e-185 651.4 742 56.6
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 3.9e-184 649.0 703 59.0
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 8.8e-184 647.9 720 57.6
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 1.5e-183 647.1 730 58.5
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 4.4e-183 645.6 712 57.6
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 5.7e-183 645.2 631 62.4
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.5e-180 637.1 713 57.6
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.0e-179 634.4 740 57.4
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 5.0e-179 632.1 763 55.4
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 9.4e-178 627.9 737 55.4
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 4.7e-177 625.5 708 56.8
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 5.2e-176 622.1 718 56.4
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 3.3e-175 619.4 710 56.3
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.3e-174 617.5 724 55.7
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 4.8e-174 615.5 740 54.9
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.4e-173 614.0 715 56.4
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.2e-172 610.9 718 54.9
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.0e-172 610.1 480 71.2
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.5e-170 603.2 720 56.4
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 2.5e-170 603.2 719 55.2
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 3.2e-170 602.8 726 54.5
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 2.7e-169 599.7 694 54.8
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 8.0e-169 598.2 706 56.2
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.8e-168 597.0 803 50.9
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 3.0e-168 596.3 708 55.2
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.0e-168 595.9 740 55.4
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 2.2e-166 590.1 711 55.1
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 2.7e-164 583.2 746 53.6
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 6.1e-161 572.0 728 53.2
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 2.8e-158 563.1 757 50.5
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 4.1e-157 559.3 382 80.9
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.7e-156 556.6 676 53.6
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 5.6e-154 548.9 734 50.4
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.2e-150 537.0 703 51.4
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.7e-148 530.0 703 51.4
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 5.9e-148 528.9 617 56.2
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 8.1e-129 465.3 530 56.8
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 3.4e-127 459.9 451 63.2
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 3.2e-125 453.4 661 48.9
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.3e-109 398.7 497 54.5
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.9e-108 395.6 497 54.3
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 2.4e-101 374.0 725 41.4
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.0e-99 367.1 232 87.5
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 9.3e-93 345.5 236 82.6
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.2e-85 320.5 430 50.0
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.3e-82 310.1 234 75.6
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.3e-82 310.1 214 80.8
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.3e-82 310.1 214 80.8
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.3e-81 308.5 425 51.8
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.2e-81 307.8 234 76.5
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.7e-78 298.1 195 82.1
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.1e-72 277.3 175 88.6
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.1e-72 277.3 534 41.6
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-66 258.5 440 44.8
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 9.1e-64 249.2 438 41.6
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 3.5e-63 247.3 380 46.3
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 3.7e-57 227.3 136 89.0
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 1.2e-55 222.2 404 43.6
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.1e-44 184.9 555 33.3
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.8e-36 157.9 283 44.9
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 8.0e-36 156.4 228 50.4
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 5.4e-32 143.7 94 78.7
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 3.9e-30 137.5 89 87.6
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.5e-29 135.6 242 40.5
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 2.0e-26 125.2 212 46.2
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 7.5e-26 123.2 215 46.5
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 1.6e-23 115.5 297 36.4
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.0e-23 113.6 73 89.0
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.0e-23 113.6 73 89.0
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.8e-23 113.2 73 89.0
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 5.0e-22 110.5 75 84.0
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.2e-20 103.6 73 86.3
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 3.7e-17 94.4 451 27.7
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.1e-13 82.8 65 69.2
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.3e-11 75.1 286 29.7
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 4.4e-10 70.9 131 41.2
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 6.4e-09 67.0 79 49.4
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 5.4e-08 63.9 50 74.0
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 3.0e-06 58.2 64 60.9


User provided reference genes

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