Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 2.4e-190 669.1 448 100.0
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.0e-99 367.1 311 95.8
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.2e-86 323.2 312 84.3
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 2.2e-82 310.5 312 84.3
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 3.7e-82 309.7 312 81.7
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 2.4e-81 307.0 313 82.7
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 5.3e-81 305.8 313 83.7
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.3e-79 301.2 313 81.5
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.5e-79 298.5 313 81.5
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.1e-78 298.1 312 81.7
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 9.4e-78 295.0 314 72.9
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.2e-77 294.7 313 75.7
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.6e-77 294.3 299 80.6
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 2.1e-77 293.9 311 81.4
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.1e-77 293.9 312 72.4
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 1.4e-76 291.2 298 75.5
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.2e-75 288.1 313 76.4
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.2e-75 288.1 298 82.6
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.0e-75 287.3 314 78.7
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 7.5e-75 285.4 300 80.7
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.3e-74 284.6 314 81.2
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.7e-74 284.3 313 77.3
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 2.8e-74 283.5 300 74.0
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.8e-74 282.7 313 75.4
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.3e-74 282.3 290 83.1
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.3e-74 282.3 290 83.1
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.4e-73 281.2 290 83.1
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.4e-73 281.2 288 85.4
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.8e-73 280.8 293 67.6
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.8e-73 280.8 307 78.8
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 3.1e-73 280.0 312 71.8
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 4.1e-73 279.6 300 80.3
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 4.1e-73 279.6 292 66.1
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 5.3e-73 279.3 288 81.9
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.2e-72 278.1 312 70.2
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.0e-72 277.3 312 68.3
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 2.0e-72 277.3 292 70.9
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 3.5e-72 276.6 293 73.7
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.5e-72 276.2 314 77.7
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 4.5e-72 276.2 292 75.0
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 4.5e-72 276.2 298 75.5
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.0e-71 275.0 293 80.2
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.0e-71 275.0 303 73.6
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.7e-71 274.2 318 77.0
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 2.2e-71 273.9 293 79.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.2e-71 273.9 297 73.4
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.8e-71 273.1 297 73.1
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 3.8e-71 273.1 293 73.0
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 3.8e-71 273.1 297 72.4
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 5.0e-71 272.7 293 74.7
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 8.5e-71 271.9 297 73.1
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-70 271.6 293 79.5
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 1.1e-70 271.6 293 79.5
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.9e-70 270.8 252 74.2
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 2.5e-70 270.4 300 80.3
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.5e-70 270.4 311 76.8
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 3.2e-70 270.0 298 81.2
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 3.2e-70 270.0 297 72.7
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 4.2e-70 269.6 297 72.4
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 4.2e-70 269.6 297 72.4
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 5.5e-70 269.2 313 77.6
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 5.5e-70 269.2 286 76.6
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 9.4e-70 268.5 290 71.4
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.6e-69 267.7 329 59.6
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 2.1e-69 267.3 298 71.5
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 3.6e-69 266.5 315 77.5
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 3.6e-69 266.5 309 71.5
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 6.1e-69 265.8 297 72.4
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 8.0e-69 265.4 294 73.8
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.0e-68 265.0 292 81.8
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.0e-68 265.0 299 79.6
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.0e-68 265.0 302 76.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-68 264.2 297 70.0
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.3e-68 263.8 297 72.4
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 2.3e-68 263.8 303 71.6
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 2.3e-68 263.8 302 68.9
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 2.3e-68 263.8 309 71.2
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 3.0e-68 263.5 290 80.0
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 3.0e-68 263.5 285 73.3
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 3.0e-68 263.5 301 74.4
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 6.8e-68 262.3 293 70.6
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.5e-67 261.2 313 72.2
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.4e-67 259.6 309 77.0
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 4.4e-67 259.6 306 75.2
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 5.7e-67 259.2 301 68.4
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.8e-67 258.5 293 80.9
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.3e-66 258.1 292 65.8
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.3e-66 258.1 292 65.8
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.8e-66 256.9 304 73.7
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 4.8e-66 256.1 316 66.8
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 4.8e-66 256.1 316 66.8
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 4.8e-66 256.1 312 71.5
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.1e-65 255.0 168 81.5
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.1e-65 255.0 292 65.1
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.1e-65 255.0 339 69.0
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.4e-65 253.8 304 59.9
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.1e-65 253.1 293 72.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.6e-64 251.1 276 75.0
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.7e-64 250.4 235 70.2
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 4.5e-64 249.6 297 71.7
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.0e-63 248.4 289 79.6
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.7e-63 247.7 297 70.7
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 2.9e-63 246.9 291 70.4
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 2.5e-62 243.8 288 74.3
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 5.5e-62 242.7 306 67.6
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 3.6e-61 240.0 285 76.8
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 9.8e-59 231.9 216 69.9
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.3e-58 231.5 300 74.7
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.7e-58 231.1 315 58.7
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 2.8e-58 230.3 216 64.4
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-57 228.0 216 81.0
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.3e-55 221.5 296 58.4
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-53 214.5 191 71.2
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 6.1e-53 212.6 174 75.9
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 1.0e-52 211.8 336 52.4
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.0e-52 209.9 290 62.4
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-51 208.4 174 64.4
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-51 208.0 174 64.4
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.7e-50 203.4 286 66.4
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 7.0e-49 199.1 174 70.7
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.7e-48 197.2 300 57.7
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 2.3e-47 194.1 183 80.3
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 7.3e-46 189.1 298 63.1
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 4.7e-45 186.4 134 74.6
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 8.9e-44 182.2 269 64.7
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.2e-43 181.8 284 70.8
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 3.7e-42 176.8 223 83.4
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.4e-41 174.9 286 63.3
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 7.1e-41 172.6 184 67.9
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-40 171.0 184 60.9
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-39 167.9 148 62.8
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.9e-39 166.8 129 72.1
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-38 165.2 130 69.2
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.9e-38 164.5 156 60.3
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.9e-38 164.5 184 57.6
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.9e-38 164.5 288 60.8
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.6e-37 161.4 121 71.9
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 8.1e-37 159.1 305 56.4
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-34 150.6 223 52.0
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 8.3e-34 149.1 155 61.3
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.9e-33 147.9 210 77.6
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 7.1e-33 146.0 149 59.1
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 2.1e-32 144.4 292 49.3
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 2.7e-32 144.1 151 61.6
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 2.7e-32 144.1 171 56.7
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.9e-30 137.9 310 56.5
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 4.7e-29 133.3 156 62.2
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 1.1e-28 132.1 150 70.7
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.9e-26 124.0 284 46.5
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.3e-22 110.5 93 67.7
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.3e-22 110.5 93 67.7
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.6e-22 109.0 93 67.7
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 3.4e-19 100.5 147 42.9
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-18 98.2 86 66.3
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-15 88.2 77 63.6
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.1e-14 85.5 87 58.6
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 1.9e-14 84.7 67 70.1
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.6e-14 83.2 157 73.2
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.2e-11 75.5 179 33.5
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 9.9e-11 72.4 61 63.9
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 6.4e-10 69.7 46 73.9
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.9e-08 62.8 62 59.7
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 4.3e-06 57.0 156 53.2


User provided reference genes

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