Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 7.2e-256 886.7 440 100.0
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 7.0e-235 817.0 451 90.7
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 9.6e-192 673.7 408 82.1
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 3.3e-184 648.7 451 73.8
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 7.3e-184 647.5 453 73.7
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 6.9e-182 641.0 430 75.1
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.3e-180 636.7 450 72.0
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.0e-177 627.1 435 73.3
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 2.3e-177 625.9 435 73.1
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.3e-177 625.9 429 73.4
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 3.9e-177 625.2 430 74.0
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 2.5e-176 622.5 430 73.7
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 2.5e-176 622.5 429 74.1
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.3e-176 621.7 429 73.2
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 4.8e-175 618.2 435 72.0
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 2.4e-174 615.9 408 74.3
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.6e-173 612.5 430 72.3
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.4e-173 612.1 410 74.4
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 9.9e-173 610.5 439 71.1
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 1.7e-172 609.8 428 72.9
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 6.4e-172 607.8 385 76.6
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.4e-172 607.8 428 72.2
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 8.4e-172 607.4 430 70.5
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.2e-170 603.6 421 72.0
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.7e-170 602.4 406 73.4
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 4.6e-170 601.7 406 73.9
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 4.6e-170 601.7 387 75.5
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 6.0e-170 601.3 393 74.6
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 6.0e-170 601.3 425 71.1
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 6.0e-170 601.3 421 71.7
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 7.9e-170 600.9 399 73.9
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.0e-169 600.5 417 71.9
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 3.9e-169 598.6 453 68.2
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.3e-167 593.6 383 74.2
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.6e-167 593.2 451 67.6
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 2.1e-167 592.8 394 73.4
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.1e-167 592.8 428 68.9
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.8e-167 592.4 448 68.3
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 4.8e-167 591.7 383 74.7
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 9.0e-166 587.4 394 71.6
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 2.0e-165 586.3 388 72.7
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 2.6e-165 585.9 425 69.6
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 3.4e-165 585.5 421 67.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 4.5e-165 585.1 429 69.2
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.3e-164 583.6 448 66.1
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 2.9e-164 582.4 441 66.2
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 1.4e-163 580.1 434 65.9
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 4.2e-163 578.6 435 66.4
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 5.5e-163 578.2 386 71.2
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 7.1e-163 577.8 446 67.3
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 7.1e-163 577.8 404 71.5
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.6e-162 576.6 408 68.6
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.6e-162 576.6 434 65.9
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 4.6e-162 575.1 429 68.3
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 6.0e-162 574.7 423 69.0
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.0e-161 573.9 447 67.8
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.8e-161 573.2 426 69.0
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.3e-161 572.8 400 70.0
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.9e-160 569.7 398 70.1
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 3.3e-160 568.9 389 71.5
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 3.3e-160 568.9 400 69.8
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 5.7e-160 568.2 401 71.1
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 9.7e-160 567.4 386 69.9
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 1.3e-159 567.0 403 71.5
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 2.8e-159 565.8 418 66.7
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 6.3e-159 564.7 433 68.4
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.8e-158 563.1 404 68.1
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.4e-158 562.8 453 65.6
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 9.0e-158 560.8 437 66.6
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 1.5e-157 560.1 423 65.5
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 2.6e-157 559.3 404 68.1
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 2.6e-157 559.3 404 68.1
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 3.4e-157 558.9 397 70.0
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 4.5e-157 558.5 386 69.7
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.3e-156 557.0 430 65.6
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 2.2e-156 556.2 416 67.1
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 5.0e-156 555.1 449 63.7
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 8.5e-156 554.3 425 64.5
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-155 553.9 431 64.3
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.1e-155 553.9 431 64.3
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.1e-155 553.9 394 69.3
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.1e-155 553.9 427 66.3
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.9e-155 553.1 441 63.0
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.5e-155 552.7 395 70.6
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 5.5e-155 551.6 383 69.2
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 5.5e-155 551.6 391 69.8
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 9.4e-155 550.8 385 69.1
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.6e-154 550.1 417 67.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.7e-154 549.3 395 69.9
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 7.9e-154 547.7 392 69.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 1.8e-153 546.6 404 67.3
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.8e-153 546.6 427 66.3
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 2.3e-153 546.2 394 68.8
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 3.0e-153 545.8 486 61.3
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 5.1e-153 545.0 434 65.7
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 1.5e-152 543.5 445 63.1
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.5e-152 542.7 387 71.3
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.7e-151 540.0 395 68.1
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.4e-150 537.0 402 67.4
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 5.3e-150 535.0 391 67.5
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 6.9e-150 534.6 440 64.3
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 7.7e-149 531.2 392 67.9
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 6.5e-148 528.1 432 61.8
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.1e-147 527.3 383 66.8
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.9e-147 526.6 386 66.1
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 7.9e-146 521.2 383 66.8
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.4e-145 520.4 398 64.6
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 3.0e-145 519.2 386 67.4
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 8.8e-145 517.7 399 67.7
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.1e-144 517.3 349 71.9
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.5e-144 516.9 386 67.1
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 9.7e-144 514.2 392 65.1
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.7e-143 512.3 452 60.8
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.7e-143 512.3 388 66.0
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 9.1e-142 507.7 386 65.5
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 2.9e-140 502.7 379 67.3
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 5.5e-139 498.4 288 81.9
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 8.0e-138 494.6 384 64.3
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 3.3e-136 489.2 386 63.2
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 3.7e-135 485.7 384 62.0
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 4.1e-134 482.3 331 69.8
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.6e-133 479.6 385 63.1
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 4.5e-133 478.8 348 69.3
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.3e-132 477.2 386 62.7
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 6.8e-129 464.9 388 60.1
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 8.8e-129 464.5 411 60.3
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 5.5e-123 445.3 418 57.4
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.8e-121 440.3 389 57.3
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.9e-116 422.9 242 81.4
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 1.9e-107 393.7 281 70.1
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 6.8e-105 385.2 282 67.7
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.4e-102 376.7 235 74.0
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.2e-102 376.3 232 74.6
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 4.7e-98 362.5 399 49.6
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.7e-95 354.0 281 63.0
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.5e-91 338.2 285 57.9
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.7e-87 327.4 431 45.0
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 8.3e-87 325.1 400 46.2
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.3e-84 317.0 250 60.8
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.9e-83 313.9 234 65.4
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.9e-73 278.9 173 78.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.7e-68 264.2 197 70.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 4.6e-61 239.6 152 75.0
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.9e-60 236.5 303 44.6
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 2.8e-58 230.3 210 61.0
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 6.2e-58 229.2 201 56.2
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.9e-55 220.3 212 56.6
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.9e-46 191.0 233 48.9
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.2e-46 189.9 196 53.6
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 5.3e-41 172.9 288 37.2
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.4e-40 170.2 146 59.6
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 5.5e-38 162.9 98 79.6
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 2.6e-32 144.1 82 76.8
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 4.5e-32 143.3 181 45.9
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.1e-27 128.6 386 29.5
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-27 128.6 318 30.2
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.5e-27 128.3 416 27.4
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 9.7e-27 125.6 254 35.0
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 2.8e-26 124.0 76 76.3
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.5e-22 110.9 222 35.6
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-20 105.1 64 70.3
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 2.3e-20 104.4 281 29.2
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.0e-20 103.6 64 68.8
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.7e-20 102.8 64 68.8
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 5.7e-19 99.8 146 42.5
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 4.1e-17 93.6 133 37.6
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 1.7e-15 88.2 103 46.6
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 7.2e-14 82.8 94 48.9
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 5.7e-11 73.2 67 52.2
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 4.8e-10 70.1 120 38.3
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.1e-09 67.0 38 76.3


User provided reference genes

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