Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 3.7e-230 801.2 413 100.0
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.4e-168 595.9 413 79.7
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 3.7e-153 545.4 415 73.7
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 6.7e-147 524.6 415 70.4
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 3.1e-144 515.8 415 68.7
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.0e-142 510.8 415 68.2
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.3e-142 510.4 415 67.7
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 5.0e-142 508.4 414 67.6
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.1e-141 507.3 415 66.7
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.5e-141 506.9 415 66.5
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.5e-141 506.9 415 66.7
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.9e-141 506.5 415 66.7
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.2e-140 503.8 415 66.5
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.2e-140 503.8 415 66.5
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.8e-139 500.0 415 66.7
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 3.0e-139 499.2 415 67.5
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.2e-139 498.4 415 66.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.6e-138 496.1 415 67.7
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 4.4e-138 495.4 418 65.8
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.7e-137 493.4 417 65.9
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 8.3e-137 491.1 415 65.3
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.4e-136 490.3 415 66.7
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.4e-136 490.3 415 65.5
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.1e-136 489.2 416 64.9
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.0e-135 486.5 414 65.5
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.7e-135 486.1 417 65.5
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 3.5e-135 485.7 415 64.8
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 2.2e-134 483.0 415 64.6
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 2.2e-134 483.0 413 64.4
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 2.2e-134 483.0 413 63.9
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 8.5e-134 481.1 415 64.6
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 8.5e-134 481.1 415 64.6
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.5e-133 480.3 413 64.6
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.2e-132 477.2 415 64.3
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.7e-132 476.1 415 64.3
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 8.0e-132 474.6 416 64.7
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 2.3e-131 473.0 415 63.9
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 3.0e-131 472.6 425 65.4
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 4.0e-131 472.2 424 64.2
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 6.8e-131 471.5 415 63.1
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 2.6e-130 469.5 416 63.2
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 4.4e-130 468.8 413 62.2
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.7e-129 466.8 416 63.0
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.8e-129 466.1 407 64.4
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 3.7e-129 465.7 448 60.0
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 6.3e-129 464.9 413 61.7
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 6.3e-129 464.9 413 61.7
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 6.3e-129 464.9 413 61.0
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 8.3e-129 464.5 413 61.3
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.1e-128 464.2 407 64.1
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.1e-128 464.2 415 62.2
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.4e-128 463.8 413 61.5
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.8e-128 463.4 413 61.3
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.8e-128 463.4 415 61.9
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 4.1e-128 462.2 413 61.5
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 5.4e-128 461.8 415 61.4
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 7.0e-128 461.5 413 61.3
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 7.0e-128 461.5 413 61.3
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 7.0e-128 461.5 413 61.3
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 7.0e-128 461.5 413 61.3
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.2e-127 460.7 415 62.2
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.2e-127 460.7 411 61.6
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 2.0e-127 459.9 413 61.0
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 2.0e-127 459.9 413 61.0
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 2.0e-127 459.9 413 61.0
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 2.0e-127 459.9 415 61.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 2.7e-127 459.5 414 61.1
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 7.7e-127 458.0 413 63.0
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.0e-126 457.6 413 60.5
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.0e-126 457.6 413 62.0
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 1.3e-126 457.2 415 63.1
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.3e-126 457.2 415 61.2
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 1.3e-126 457.2 415 61.4
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.3e-126 457.2 414 60.4
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 3.8e-126 455.7 413 60.5
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 8.6e-126 454.5 414 60.6
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 1.1e-125 454.1 415 60.2
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 4.3e-125 452.2 419 60.6
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 5.6e-125 451.8 415 60.2
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 7.3e-125 451.4 413 61.3
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 4.7e-124 448.7 415 61.2
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 8.0e-124 448.0 415 59.5
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.0e-123 447.6 413 60.8
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 5.2e-123 445.3 395 62.8
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 8.9e-123 444.5 414 59.2
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.0e-122 443.4 406 59.9
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.0e-122 443.4 413 60.8
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.3e-121 440.7 324 72.5
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.9e-121 439.5 324 72.2
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 8.3e-121 438.0 415 61.2
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 5.4e-120 435.3 415 59.5
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 8.6e-118 427.9 326 69.3
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 4.3e-117 425.6 342 67.5
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.4e-115 420.6 414 57.5
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 6.8e-115 418.3 406 57.1
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.2e-114 417.5 378 60.6
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.5e-114 417.2 406 59.1
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.7e-110 403.7 313 71.2
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 5.6e-109 398.7 342 62.6
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 2.3e-107 393.3 300 70.3
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 6.8e-107 391.7 415 55.2
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 5.8e-106 388.7 456 52.6
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.3e-102 377.5 380 58.2
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 9.5e-101 371.3 413 52.1
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.1e-99 366.3 413 51.8
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 6.8e-99 365.2 324 61.4
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 4.9e-97 359.0 325 60.0
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.1e-96 357.8 422 49.5
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 1.9e-93 347.1 292 65.1
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 2.4e-88 330.1 413 49.4
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 4.6e-87 325.9 292 61.3
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 1.8e-83 313.9 264 64.8
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-82 311.2 415 47.0
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.0e-79 298.9 274 61.3
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 4.8e-76 289.3 458 45.4
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.7e-71 273.5 267 56.9
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.3e-70 271.2 414 42.8
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 3.0e-70 270.0 267 57.7
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 4.3e-69 266.2 405 42.5
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.4e-67 261.2 187 73.3
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 3.8e-65 253.1 204 64.2
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 3.9e-62 243.0 275 47.6
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 4.3e-61 239.6 275 51.3
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.3e-52 211.5 165 67.9
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 2.2e-52 210.7 254 50.4
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 9.1e-51 205.3 196 59.7
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 4.2e-48 196.4 196 53.6
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 2.7e-47 193.7 334 38.6
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.3e-44 182.6 114 80.7
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.4e-43 181.4 213 50.2
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.5e-42 177.9 188 54.3
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.9e-38 163.3 183 53.6
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.7e-33 147.9 132 61.4
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 3.8e-33 146.7 401 29.7
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 8.8e-30 135.6 292 32.5
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 7.5e-29 132.5 379 26.9
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.7e-25 121.3 95 71.6
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 8.0e-23 112.5 123 56.1
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.8e-22 109.4 98 62.2
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 9.8e-21 105.5 106 58.5
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 2.8e-20 104.0 126 50.0
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 6.1e-15 86.3 125 41.6


User provided reference genes

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