Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 5.8e-201 704.5 500 100.0
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 4.8e-123 445.7 244 90.2
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 1.0e-85 321.6 298 61.1
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 2.1e-73 280.8 244 59.4
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 4.9e-67 259.6 161 78.9
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 5.4e-66 256.1 249 56.6
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 2.3e-64 250.8 243 54.3
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 3.3e-63 246.9 245 52.7
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 4.3e-63 246.5 249 53.8
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.1e-58 231.9 200 56.5
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.7e-57 227.3 200 56.0
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 3.5e-57 226.9 233 50.6
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 6.0e-57 226.1 236 51.3
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 3.0e-56 223.8 242 48.8
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 3.6e-54 216.9 181 56.9
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 1.4e-53 214.9 237 50.2
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 1.8e-53 214.5 204 52.5
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 3.1e-53 213.8 244 46.3
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 1.2e-52 211.8 218 50.5
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 1.2e-52 211.8 244 43.9
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 4.4e-52 209.9 168 58.3
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 3.2e-50 203.8 224 52.7
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 3.5e-49 200.3 195 50.8
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 2.3e-48 197.6 246 43.9
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 2.3e-48 197.6 246 43.9
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 6.6e-48 196.1 231 47.2
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 8.7e-48 195.7 216 51.4
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 1.5e-47 194.9 194 49.0
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 1.9e-47 194.5 196 48.5
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 4.3e-47 193.4 215 48.8
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 9.6e-47 192.2 206 47.6
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.3e-46 191.8 207 46.9
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 2.8e-46 190.7 185 49.2
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 3.6e-46 190.3 206 47.1
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 3.6e-46 190.3 240 42.5
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 8.1e-46 189.1 205 46.3
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 1.8e-45 188.0 246 45.1
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 1.8e-45 188.0 233 44.2
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 2.4e-45 187.6 209 45.9
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 3.1e-45 187.2 209 45.9
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 3.1e-45 187.2 209 45.9
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 4.0e-45 186.8 195 47.2
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 5.3e-45 186.4 214 45.8
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 6.9e-45 186.0 239 43.1
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 6.9e-45 186.0 195 46.7
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 9.0e-45 185.7 195 46.2
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 1.2e-44 185.3 218 45.0
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 2.6e-44 184.1 197 46.2
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 2.9e-43 180.6 192 46.4
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 6.4e-43 179.5 187 45.5
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 8.4e-43 179.1 220 42.7
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 8.4e-43 179.1 195 45.6
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 5.5e-42 176.4 213 41.8
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 1.2e-41 175.3 214 41.6
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 3.5e-41 173.7 207 44.9
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 1.0e-40 172.2 183 46.4
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 1.3e-40 171.8 198 44.4
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 1.8e-40 171.4 192 46.9
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 5.1e-40 169.9 222 41.9
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 1.5e-39 168.3 230 41.7
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 1.5e-39 168.3 230 41.7
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.5e-39 168.3 193 44.0
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 7.4e-39 166.0 183 47.5
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 9.6e-39 165.6 190 45.3
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 9.6e-39 165.6 200 42.5
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 2.8e-38 164.1 177 42.9
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 4.8e-38 163.3 213 42.3
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 4.8e-38 163.3 230 39.6
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 8.1e-38 162.5 164 45.7
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 5.3e-37 159.8 183 45.4
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 2.0e-36 157.9 175 43.4
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 2.0e-36 157.9 149 50.3
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 2.6e-36 157.5 186 43.5
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 2.6e-36 157.5 188 46.3
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 3.4e-36 157.1 186 43.5
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 5.8e-36 156.4 228 38.6
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 5.8e-36 156.4 229 37.1
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 6.5e-35 152.9 209 42.1
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 1.9e-34 151.4 200 39.0
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 3.2e-34 150.6 210 41.9
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 3.2e-34 150.6 186 39.8
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 3.2e-34 150.6 210 43.8
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 2.3e-32 144.4 177 42.9
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 3.9e-32 143.7 179 40.8
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 9.0e-29 132.5 232 34.9
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 6.5e-27 126.3 156 39.7
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 7.2e-26 122.9 188 40.4
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 1.5e-23 115.2 170 34.7
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 6.9e-21 106.3 194 32.5
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 6.5e-19 99.8 73 60.3
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 2.5e-18 97.8 229 28.8
CANSAT56G2257 Cannabis sativa HOM05D002890 ORTHO05D009847 1.7e-14 85.1 204 28.9
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 1.1e-13 82.4 69 49.3
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 1.4e-13 82.0 160 33.1
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 2.4e-13 81.3 58 67.2
Ciclev10014539m.g Citrus clementina HOM05D002890 ORTHO05D009847 5.9e-12 76.6 213 25.8
SGA_v2.0_scaffold7G03840 Striga asiatica HOM05D002890 ORTHO05D009847 1.0e-11 75.9 173 26.6
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.3e-11 75.5 49 71.4
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 1.3e-11 75.5 171 27.5
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.2e-11 74.7 160 28.8
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 2.9e-11 74.3 183 24.6
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 5.0e-11 73.6 57 56.1
Potri.011G003700 Populus trichocarpa HOM05D002890 ORTHO05D009847 8.5e-11 72.8 191 25.1
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 1.4e-10 72.0 57 50.9
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 3.2e-10 70.9 175 25.1
Sabra11G0002200 Salix brachista HOM05D002890 ORTHO05D009847 7.2e-10 69.7 191 23.6
Sabra11G0002700 Salix brachista HOM05D002890 ORTHO05D009847 7.2e-10 69.7 191 23.6
PGR042G0565 Punica granatum HOM05D002890 ORTHO05D009847 9.4e-10 69.3 192 27.1
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 9.4e-10 69.3 184 23.9
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 1.6e-09 68.6 183 23.0
Dinv13895 Davidia involucrata HOM05D002975 ORTHO05D003564 2.1e-09 68.2 204 22.5
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 2.7e-09 67.8 193 23.3
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 3.6e-09 67.4 184 22.3
Atru.chr10.2229 Acer truncatum HOM05D002890 ORTHO05D009847 4.7e-09 67.0 184 25.0
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 4.7e-09 67.0 188 22.3
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 7.9e-09 66.2 48 62.5
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 1.0e-08 65.9 48 62.5
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 1.4e-08 65.5 185 23.2
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 1.8e-08 65.1 258 23.6
Prupe.2G064100 Prunus persica HOM05D002890 ORTHO05D009847 1.8e-08 65.1 173 23.7
CsaV3_1G043280 Cucumis sativus L. HOM05D007455 ORTHO05D009431 2.3e-08 64.7 215 23.7
CAN.G578.7 Capsicum annuum HOM05D002890 ORTHO05D009847 3.0e-08 64.3 188 22.9
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 5.1e-08 63.5 185 22.2
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 5.1e-08 63.5 75 38.7
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.1e-08 63.5 259 24.7
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 6.7e-08 63.2 121 37.2
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 6.7e-08 63.2 47 61.7
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 8.8e-08 62.8 48 60.4
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 8.8e-08 62.8 48 60.4
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 1.5e-07 62.0 217 27.6
RcHm_v2.0_Chr6g0260541 Rosa chinensis HOM05D007083 ORTHO05D008801 1.5e-07 62.0 42 66.7
HPP92_012317 Vanilla planifolia HOM05D002890 ORTHO05D009847 2.0e-07 61.6 193 23.8
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 5.7e-07 60.1 267 22.5
TAR636G1848 Trochodendron aralioides HOM05D007455 ORTHO05D009431 7.4e-07 59.7 212 24.5
CiPaw.09G092100 Carya illinoinensis HOM05D002890 ORTHO05D009847 9.7e-07 59.3 161 25.5
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 9.7e-07 59.3 175 24.0
Sc17g0007390 Simmondsia chinensis HOM05D002890 ORTHO05D009847 9.7e-07 59.3 188 20.2
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.3e-06 58.9 209 24.4
Gorai.010G180200 Gossypium raimondii HOM05D002890 ORTHO05D009847 1.3e-06 58.9 184 22.3
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 1.3e-06 58.9 206 21.4
PSO384G2302 Papaver somniferum HOM05D007455 ORTHO05D009431 1.3e-06 58.9 167 24.6
HPP92_012398 Vanilla planifolia HOM05D002890 ORTHO05D009847 1.3e-06 58.9 193 23.8
Duzib235G0255 Durio zibethinus HOM05D002890 ORTHO05D009847 1.7e-06 58.5 183 23.5
Eucgr.E02357 Eucalyptus grandis HOM05D002890 ORTHO05D009847 1.7e-06 58.5 172 22.1
Lsat_1_v5_gn_7_16080 Lactuca sativa HOM05D002890 ORTHO05D009847 1.7e-06 58.5 180 23.9
Manes.14G133200 Manihot esculenta HOM05D002890 ORTHO05D009847 1.7e-06 58.5 173 23.7
Gohir.D06G154100 Gossypium hirsutum HOM05D002890 ORTHO05D009847 2.2e-06 58.2 184 22.3
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 2.2e-06 58.2 207 25.6
Cc09_g01660 Coffea canephora HOM05D002890 ORTHO05D009847 2.8e-06 57.8 184 22.3
Gohir.D01G172300 Gossypium hirsutum HOM05D007675 ORTHO05D009699 3.7e-06 57.4 226 26.1
Gorai.002G213900 Gossypium raimondii HOM05D007675 ORTHO05D009699 6.3e-06 56.6 225 24.9


User provided reference genes

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