Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 4.6e-152 541.2 276 100.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.2e-86 323.9 213 80.3
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.4e-84 315.1 213 79.8
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 5.1e-82 308.5 220 76.4
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.3e-81 305.8 211 77.7
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.8e-80 302.8 211 76.3
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.2e-77 293.1 211 73.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.4e-76 290.4 214 72.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.2e-75 287.3 214 71.5
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.6e-75 287.0 211 72.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.6e-75 287.0 211 72.5
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.5e-75 285.8 213 70.0
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.3e-74 283.1 213 68.5
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.3e-74 283.1 213 70.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.0e-74 282.7 213 70.9
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 3.9e-74 282.3 213 70.9
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 5.1e-74 282.0 213 70.4
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 6.6e-74 281.6 213 70.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 6.6e-74 281.6 213 70.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 8.7e-74 281.2 213 70.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 8.7e-74 281.2 213 70.9
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.1e-73 280.8 214 68.7
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.5e-73 280.4 213 70.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.9e-73 280.0 213 70.0
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.5e-73 279.6 213 70.4
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 7.3e-73 278.1 215 69.8
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.3e-72 277.3 213 69.0
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.8e-72 276.2 213 71.4
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 4.8e-72 275.4 214 66.8
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.8e-72 275.4 213 70.4
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 6.2e-72 275.0 213 69.5
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.2e-72 275.0 213 70.4
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 8.1e-72 274.6 213 69.0
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 8.1e-72 274.6 213 69.0
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 8.1e-72 274.6 227 63.9
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.4e-71 273.9 213 70.0
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.4e-71 273.9 213 70.0
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.8e-71 273.5 213 69.0
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.8e-71 273.5 215 68.4
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 4.0e-71 272.3 213 70.4
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 5.3e-71 271.9 213 69.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.3e-71 271.9 213 70.4
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 9.0e-71 271.2 213 68.1
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.2e-70 270.8 213 65.7
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.0e-70 270.0 213 67.6
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.6e-70 269.6 213 67.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.4e-70 269.2 213 67.1
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.5e-70 268.9 213 66.2
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 4.5e-70 268.9 213 67.1
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 5.8e-70 268.5 213 68.1
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 7.6e-70 268.1 213 67.1
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 7.6e-70 268.1 212 67.0
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.3e-69 267.3 214 69.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.7e-69 266.9 213 65.3
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.7e-69 266.9 213 66.2
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 2.2e-69 266.5 213 67.1
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 4.9e-69 265.4 213 67.1
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.9e-69 265.4 216 64.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.1e-68 264.2 213 67.1
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.1e-68 264.2 213 65.7
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.9e-68 263.5 213 67.1
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.4e-68 263.1 214 68.7
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.4e-68 263.1 213 65.7
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 9.3e-68 261.2 213 67.6
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.6e-67 260.4 213 64.8
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.1e-67 260.0 213 66.2
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.1e-67 260.0 213 64.3
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.7e-67 259.6 214 66.8
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.5e-67 259.2 214 65.9
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.5e-67 259.2 215 64.2
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 3.5e-67 259.2 213 64.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 3.5e-67 259.2 213 64.3
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.6e-67 258.8 213 64.3
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.6e-67 258.8 213 64.3
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.0e-67 258.5 212 64.6
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 7.9e-67 258.1 213 64.3
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.0e-66 257.7 213 66.2
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.0e-66 257.7 213 64.3
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.3e-66 257.3 213 63.4
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.3e-66 257.3 213 63.8
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.8e-66 256.9 213 64.3
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.8e-66 256.9 213 64.3
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.3e-66 256.5 213 64.3
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 2.3e-66 256.5 213 62.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.1e-66 255.4 212 62.3
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 6.7e-66 255.0 213 63.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.7e-66 254.6 222 62.6
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-65 253.8 213 63.8
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.5e-65 253.8 213 63.8
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.9e-65 253.4 213 63.8
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.3e-65 252.7 213 62.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.3e-65 252.7 213 62.9
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.3e-65 252.7 213 64.8
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 7.4e-65 251.5 213 62.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.4e-65 251.5 221 62.0
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 7.4e-65 251.5 232 58.2
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.3e-64 250.8 213 62.9
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.1e-64 250.0 213 63.4
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.1e-64 250.0 213 62.4
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.7e-64 249.2 213 62.0
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 4.8e-64 248.8 213 63.4
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 4.8e-64 248.8 217 62.7
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 6.2e-64 248.4 212 61.8
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.4e-63 247.3 213 62.4
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.8e-63 246.9 213 62.4
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.8e-63 246.9 213 61.5
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.4e-63 246.5 214 62.6
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 4.0e-63 245.7 239 60.3
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.0e-63 245.7 213 60.1
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.0e-63 245.7 213 64.3
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.3e-63 245.4 213 60.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 5.3e-63 245.4 215 61.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 9.0e-63 244.6 213 62.0
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.5e-62 243.8 213 62.0
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-62 243.8 214 62.1
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-62 243.8 213 61.5
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.0e-62 243.4 215 60.5
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.4e-62 242.7 213 60.6
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 9.9e-62 241.1 213 61.5
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.3e-61 240.7 213 60.1
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.7e-61 240.4 213 61.5
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.2e-61 240.0 213 60.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.9e-61 239.6 213 59.6
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 4.9e-61 238.8 213 61.0
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.4e-60 237.3 213 61.0
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.4e-60 237.3 213 61.5
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.4e-60 236.5 235 57.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 3.2e-60 236.1 220 58.6
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.2e-59 234.2 213 60.1
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.0e-58 229.6 214 58.4
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 3.0e-58 229.6 213 58.2
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.9e-58 229.2 229 55.9
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 4.3e-57 225.7 215 58.1
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 5.6e-57 225.3 210 57.1
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 6.2e-56 221.9 213 55.4
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.8e-55 220.3 184 67.4
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 9.0e-55 218.0 212 55.7
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.0e-53 214.5 213 54.5
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.5e-52 209.9 206 54.4
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.5e-52 208.8 208 53.4
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.3e-50 204.1 204 53.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.5e-49 200.7 196 55.6
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 5.3e-47 192.2 186 56.5
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 5.0e-45 185.7 213 48.4
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 6.5e-45 185.3 214 51.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.6e-38 163.3 220 50.5
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 9.4e-36 154.8 126 69.0
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.1e-35 152.1 135 63.7
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 5.1e-34 149.1 130 62.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 8.8e-34 148.3 105 67.6
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 9.7e-33 144.8 175 50.9
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.2e-32 143.7 128 61.7
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.1e-28 131.3 148 49.3
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.1e-25 121.3 70 75.7
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 7.7e-22 108.6 189 42.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.2e-21 107.1 130 50.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 3.8e-21 106.3 79 70.9
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.9e-20 104.0 52 96.2
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 4.7e-19 99.4 70 74.3
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.3e-17 93.2 65 72.3
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 5.7e-17 92.4 77 62.3
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 7.5e-17 92.0 63 68.3
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.2e-16 90.5 68 72.1
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.2e-14 84.7 68 69.1
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 2.7e-14 83.6 216 32.4
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 2.7e-14 83.6 70 57.1
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 7.7e-14 82.0 216 30.6
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-13 81.3 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.2e-13 80.5 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.9e-12 77.4 59 67.8
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 8.0e-11 72.0 76 47.4
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.5e-06 56.6 29 79.3


User provided reference genes

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