Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0040800 Salix brachista HOM05D010229 ORTHO05D010643 8.3e-58 226.9 118 100.0
Sabra16G0139900 Salix brachista HOM05D010229 ORTHO05D010643 1.5e-27 126.3 70 91.4
Sabra05G0134300 Salix brachista HOM05D010229 ORTHO05D012533 1.7e-26 122.9 69 91.3
Sabra18G0040400 Salix brachista HOM05D000012 ORTHO05D000804 4.9e-18 94.7 52 92.3
Sabra18G0040500 Salix brachista HOM05D000012 ORTHO05D000804 4.9e-18 94.7 52 92.3
Sabra18G0041000 Salix brachista HOM05D000012 ORTHO05D000804 4.9e-18 94.7 52 92.3
Sabra18G0042100 Salix brachista HOM05D000012 ORTHO05D000804 4.9e-18 94.7 52 92.3
Sabra18G0042200 Salix brachista HOM05D000012 ORTHO05D000804 4.9e-18 94.7 52 92.3
Sabra18G0042400 Salix brachista HOM05D000012 ORTHO05D000804 4.9e-18 94.7 52 92.3
Sabra18G0040700 Salix brachista HOM05D000012 ORTHO05D000804 1.1e-17 93.6 52 90.4
Potri.018G040500 Populus trichocarpa HOM05D000012 ORTHO05D000804 1.9e-17 92.8 52 90.4
Potri.018G041400 Populus trichocarpa HOM05D000012 ORTHO05D000804 1.9e-17 92.8 52 90.4
Potri.018G041500 Populus trichocarpa HOM05D000012 ORTHO05D000804 1.9e-17 92.8 52 90.4
Potri.018G041600 Populus trichocarpa HOM05D000012 ORTHO05D000804 1.9e-17 92.8 52 90.4
Sabra01G0174000 Salix brachista HOM05D010229 ORTHO05D012533 3.7e-13 78.6 69 59.4
Sabra11G0012300 Salix brachista HOM05D010229 ORTHO05D012533 3.7e-13 78.6 69 59.4
Sabra11G0012600 Salix brachista HOM05D010229 ORTHO05D012533 3.7e-13 78.6 69 59.4
Sabra17G0008800 Salix brachista HOM05D010229 ORTHO05D012533 4.0e-12 75.1 70 57.1
Potri.018G041700 Populus trichocarpa HOM05D000012 ORTHO05D000804 2.0e-11 72.8 52 69.2
Potri.018G041800 Populus trichocarpa HOM05D000012 ORTHO05D000804 4.5e-11 71.6 52 69.2
vmacro00708 Vaccinium macrocarpon HOM05D000012 ORTHO05D010643 7.6e-11 70.9 49 67.3
Ciclev10029786m.g Citrus clementina HOM05D000012 ORTHO05D000804 2.9e-10 68.9 52 63.5
Ciclev10029930m.g Citrus clementina HOM05D000012 ORTHO05D000804 2.9e-10 68.9 52 63.5
Potri.018G040400 Populus trichocarpa HOM05D000012 ORTHO05D000804 2.9e-10 68.9 64 59.4
Sabra18G0040200 Salix brachista HOM05D000012 ORTHO05D000804 2.9e-10 68.9 64 59.4
Sabra18G0041800 Salix brachista HOM05D000012 ORTHO05D000804 2.9e-10 68.9 64 59.4
TWI23G0826 Tripterygium wilfordii HOM05D000012 ORTHO05D000804 4.9e-10 68.2 64 57.8
QL12p029169 Quercus lobata HOM05D000012 ORTHO05D000804 8.4e-10 67.4 52 65.4
TWI23G1217 Tripterygium wilfordii HOM05D000012 ORTHO05D000804 1.1e-09 67.0 69 56.5
Ciclev10010641m.g Citrus clementina HOM05D000012 ORTHO05D000804 1.9e-09 66.2 52 59.6
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 3.2e-09 65.5 64 54.7
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 3.2e-09 65.5 64 54.7
Lj7C704G4 Lonicera japonica HOM05D000012 ORTHO05D000804 3.2e-09 65.5 64 54.7
Lj1g0024477 Lotus japonicus HOM05D000012 ORTHO05D000804 3.2e-09 65.5 52 63.5
TWI63G1711 Tripterygium wilfordii HOM05D000012 ORTHO05D000804 3.2e-09 65.5 64 54.7
Lj7A704T82 Lonicera japonica HOM05D000012 ORTHO05D000804 4.2e-09 65.1 47 66.0
PGR031G3345 Punica granatum HOM05D000012 ORTHO05D000804 4.2e-09 65.1 52 59.6
Ciclev10010188m.g Citrus clementina HOM05D000012 ORTHO05D000804 9.3e-09 63.9 50 58.0
Ciclev10007857m.g Citrus clementina HOM05D000012 ORTHO05D000804 1.6e-08 63.2 52 55.8
Eucgr.C00542 Eucalyptus grandis HOM05D000012 ORTHO05D000804 2.1e-08 62.8 64 53.1
AUR62009300 Chenopodium quinoa HOM05D000012 ORTHO05D000804 2.7e-08 62.4 47 63.8
AUR62041715 Chenopodium quinoa HOM05D000012 ORTHO05D000804 2.7e-08 62.4 47 63.8
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 3.5e-08 62.0 64 53.1
C09p65240 Brassica napus HOM05D000012 ORTHO05D016460 3.5e-08 62.0 64 53.1
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 3.5e-08 62.0 64 53.1
Eucgr.C00586 Eucalyptus grandis HOM05D000012 ORTHO05D000804 3.5e-08 62.0 49 61.2
Eucgr.C03811 Eucalyptus grandis HOM05D000012 ORTHO05D000804 3.5e-08 62.0 63 50.8
Sabra11G0076600 Salix brachista HOM05D010229 ORTHO05D348994 3.5e-08 62.0 70 48.6
Sabra16G0314600 Salix brachista HOM05D010229 ORTHO05D000002 6.0e-08 61.2 69 49.3
AL6G22260 Arabidopsis lyrata HOM05D000012 ORTHO05D016460 7.9e-08 60.8 52 55.8
Carub.0006s1004 Capsella rubella HOM05D000012 ORTHO05D016460 7.9e-08 60.8 52 55.8
Hma1.2p1_0590F.1_g185070 Hydrangea macrophylla HOM05D000012 ORTHO05D010643 7.9e-08 60.8 47 61.7
Hma1.2p1_1195F.1_g265940 Hydrangea macrophylla HOM05D000012 ORTHO05D000804 7.9e-08 60.8 68 54.4
Cc08_g09340 Coffea canephora HOM05D000012 ORTHO05D000804 1.0e-07 60.5 52 53.8
Sc14g0006510 Simmondsia chinensis HOM05D000012 ORTHO05D000804 1.0e-07 60.5 52 57.7
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 1.3e-07 60.1 52 55.8
GSVIVG01017052001 Vitis vinifera HOM05D000012 ORTHO05D000804 1.3e-07 60.1 64 48.4
AT5G11570 Arabidopsis thaliana HOM05D000012 ORTHO05D016460 1.8e-07 59.7 52 55.8
Cc08_g09360 Coffea canephora HOM05D000012 ORTHO05D000804 1.8e-07 59.7 52 53.8
COL.COLO4_18661 Corchorus olitorius HOM05D000012 ORTHO05D000804 1.8e-07 59.7 79 43.0
TAR383G0710 Trochodendron aralioides HOM05D000012 ORTHO05D000804 1.8e-07 59.7 64 46.9
Actinidia14670 Actinidia chinensis HOM05D000012 ORTHO05D000804 2.3e-07 59.3 71 45.1
Lj7A704T81 Lonicera japonica HOM05D000012 ORTHO05D010643 2.3e-07 59.3 47 63.8
CiPaw.08G025100 Carya illinoinensis HOM05D000012 ORTHO05D000804 3.0e-07 58.9 52 59.6
Cc08_g09260 Coffea canephora HOM05D000012 ORTHO05D000804 3.0e-07 58.9 52 53.8
Cc08_g09320 Coffea canephora HOM05D000012 ORTHO05D010643 3.0e-07 58.9 61 45.9
DCAR_015128 Daucus carota HOM05D000012 ORTHO05D000804 3.0e-07 58.9 64 48.4
Hund19524 Selenicereus undatus HOM05D000012 ORTHO05D000804 3.0e-07 58.9 52 51.9
Aqoxy7G01543 Aquilegia oxysepala HOM05D000012 ORTHO05D000804 3.9e-07 58.5 64 43.8
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 3.9e-07 58.5 52 53.8
CSS0035761 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D000804 3.9e-07 58.5 61 49.2
Duzib168G0113 Durio zibethinus HOM05D000012 ORTHO05D000804 3.9e-07 58.5 79 41.8
Gohir.A05G247900 Gossypium hirsutum HOM05D000012 ORTHO05D000804 3.9e-07 58.5 64 45.3
Gohir.D05G251300 Gossypium hirsutum HOM05D000012 ORTHO05D000804 3.9e-07 58.5 64 45.3
Gorai.009G262700 Gossypium raimondii HOM05D000012 ORTHO05D000804 3.9e-07 58.5 64 45.3
Manes.16G072300 Manihot esculenta HOM05D000012 ORTHO05D000804 3.9e-07 58.5 64 51.6
CSS0038186 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D000804 5.1e-07 58.2 56 53.6
CARHR201650 Cardamine hirsuta HOM05D000012 ORTHO05D016460 5.1e-07 58.2 52 57.7
DCAR_007714 Daucus carota HOM05D000012 ORTHO05D000804 5.1e-07 58.2 52 51.9
Actinidia15736 Actinidia chinensis HOM05D000012 ORTHO05D000804 6.7e-07 57.8 71 45.1
Gohir.A08G250300 Gossypium hirsutum HOM05D000012 ORTHO05D000804 6.7e-07 57.8 52 51.9
Gohir.D08G271800 Gossypium hirsutum HOM05D000012 ORTHO05D000804 6.7e-07 57.8 52 51.9
Gorai.004G290200 Gossypium raimondii HOM05D000012 ORTHO05D000804 6.7e-07 57.8 52 51.9
Hund06640 Selenicereus undatus HOM05D000012 ORTHO05D000804 6.7e-07 57.8 64 45.3
Hund19522 Selenicereus undatus HOM05D000012 ORTHO05D000804 6.7e-07 57.8 52 53.8
CSS0013497 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D000804 8.7e-07 57.4 47 59.6
CSS0033882 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D000804 8.7e-07 57.4 47 59.6
Gohir.A09G020500 Gossypium hirsutum HOM05D000012 ORTHO05D000804 8.7e-07 57.4 64 46.9
Gohir.D08G271700 Gossypium hirsutum HOM05D000012 ORTHO05D000804 8.7e-07 57.4 52 51.9
Gorai.004G290100 Gossypium raimondii HOM05D000012 ORTHO05D000804 8.7e-07 57.4 52 51.9
Thecc.08G165300 Theobroma cacao HOM05D000012 ORTHO05D000804 8.7e-07 57.4 64 45.3
Atru.chr7.2132 Acer truncatum HOM05D000012 ORTHO05D000804 1.1e-06 57.0 52 50.0
BcaNung01935 Brassica carinata HOM05D000012 ORTHO05D016460 1.1e-06 57.0 52 53.8
BolC2t06472H Brassica oleracea HOM05D000012 ORTHO05D016460 1.1e-06 57.0 48 54.2
Cfa002102 Carpinus fangiana HOM05D000012 ORTHO05D000804 1.1e-06 57.0 64 46.9
ClCG09G001900 Citrullus lanatus HOM05D000012 ORTHO05D000804 1.1e-06 57.0 61 49.2
DCAR_004479 Daucus carota HOM05D000012 ORTHO05D000804 1.1e-06 57.0 62 50.0
DCAR_030850 Daucus carota HOM05D000012 ORTHO05D000804 1.1e-06 57.0 80 37.5
Dinv38011 Davidia involucrata HOM05D000012 ORTHO05D000804 1.1e-06 57.0 64 48.4
Eucgr.C03809 Eucalyptus grandis HOM05D000012 ORTHO05D000804 1.1e-06 57.0 67 46.3
Prupe.7G226200 Prunus persica HOM05D000012 ORTHO05D000804 1.1e-06 57.0 52 53.8
Cc08_g09370 Coffea canephora HOM05D000012 ORTHO05D000804 1.5e-06 56.6 52 51.9
Lsat_1_v5_gn_8_95941 Lactuca sativa HOM05D000012 ORTHO05D000804 1.5e-06 56.6 49 53.1
Nn2g11669 Nelumbo nucifera HOM05D000012 ORTHO05D000804 1.9e-06 56.2 52 55.8
CANSAT56G3084 Cannabis sativa HOM05D000012 ORTHO05D000804 2.5e-06 55.8 61 45.9
Cc00_g26240 Coffea canephora HOM05D000012 ORTHO05D000804 2.5e-06 55.8 47 53.2
FvH4_1g05500 Fragaria vesca HOM05D000012 ORTHO05D000804 2.5e-06 55.8 64 50.0
Gohir.A08G250100 Gossypium hirsutum HOM05D000012 ORTHO05D000804 2.5e-06 55.8 52 51.9
Gohir.D09G020050 Gossypium hirsutum HOM05D000012 ORTHO05D000804 2.5e-06 55.8 52 51.9
Gorai.006G023500 Gossypium raimondii HOM05D000012 ORTHO05D000804 2.5e-06 55.8 52 51.9
Manes.11G037200 Manihot esculenta HOM05D000012 ORTHO05D000804 2.5e-06 55.8 85 40.0
Phvul.009G108400 Phaseolus vulgaris HOM05D000012 ORTHO05D000804 2.5e-06 55.8 52 55.8
Sabra01G0154400 Salix brachista HOM05D000012 ORTHO05D000804 2.5e-06 55.8 78 43.6
Sed0014088 Sechium edule HOM05D000012 ORTHO05D000804 2.5e-06 55.8 78 43.6
Thecc.09G043000 Theobroma cacao HOM05D000012 ORTHO05D000804 2.5e-06 55.8 47 53.2
TAR624G0489 Trochodendron aralioides HOM05D000012 ORTHO05D000804 2.5e-06 55.8 64 43.8
TAR636G2260 Trochodendron aralioides HOM05D000012 ORTHO05D000804 2.5e-06 55.8 52 51.9
Actinidia21690 Actinidia chinensis HOM05D000012 ORTHO05D000804 3.3e-06 55.5 61 47.5
Ah.01g005590 Amaranthus hybridus HOM05D000012 ORTHO05D000804 3.3e-06 55.5 47 59.6
Aqoxy7G03812 Aquilegia oxysepala HOM05D000012 ORTHO05D000804 3.3e-06 55.5 47 51.1
AUR62000995 Chenopodium quinoa HOM05D000012 ORTHO05D000804 3.3e-06 55.5 52 53.8
CsaV3_7G033440 Cucumis sativus L. HOM05D000012 ORTHO05D000804 3.3e-06 55.5 61 49.2
Dinv30275 Davidia involucrata HOM05D000012 ORTHO05D000804 3.3e-06 55.5 64 46.9
Peaxi162Scf00064g01530 Petunia axillaris HOM05D000012 ORTHO05D000804 3.3e-06 55.5 49 44.9
TPR.G1332 Trifolium pratense HOM05D000012 ORTHO05D000804 3.3e-06 55.5 47 59.6
Atru.chr7.2131 Acer truncatum HOM05D000012 ORTHO05D010643 4.3e-06 55.1 52 48.1
EL10Ac2g04036 Beta vulgaris HOM05D000012 ORTHO05D000804 4.3e-06 55.1 52 53.8
AUR62004966 Chenopodium quinoa HOM05D000012 ORTHO05D000804 4.3e-06 55.1 52 53.8
Duzib235G0362 Durio zibethinus HOM05D000012 ORTHO05D000804 4.3e-06 55.1 64 46.9
Gohir.A05G131900 Gossypium hirsutum HOM05D000012 ORTHO05D000804 4.3e-06 55.1 64 46.9
Gohir.D05G132000 Gossypium hirsutum HOM05D000012 ORTHO05D000804 4.3e-06 55.1 64 46.9
Gorai.009G135700 Gossypium raimondii HOM05D000012 ORTHO05D000804 4.3e-06 55.1 64 46.9
Oeu041158.1 Olea europaea HOM05D000012 ORTHO05D000804 4.3e-06 55.1 51 51.0
Potri.001G185700 Populus trichocarpa HOM05D000012 ORTHO05D000804 4.3e-06 55.1 63 50.8
PGR102G2029 Punica granatum HOM05D000012 ORTHO05D000804 4.3e-06 55.1 62 46.8
SalBow1G1435 Salvia bowleyana HOM05D000012 ORTHO05D000804 4.3e-06 55.1 72 43.1
MELO3C024625.2 Cucumis melo HOM05D000012 ORTHO05D000804 5.6e-06 54.7 64 46.9
ECA234G0566 Erigeron canadensis HOM05D000012 ORTHO05D000804 5.6e-06 54.7 49 53.1
FAN28G3014 Fragaria x ananassa HOM05D000012 ORTHO05D000804 5.6e-06 54.7 64 48.4
Glyma.04G082700 Glycine max HOM05D000012 ORTHO05D000804 5.6e-06 54.7 52 53.8
TAR624G0874 Trochodendron aralioides HOM05D000012 ORTHO05D000804 5.6e-06 54.7 58 41.4
VMungo1309G2022 Vigna mungo HOM05D000012 ORTHO05D000804 5.6e-06 54.7 52 53.8
AUR62011682 Chenopodium quinoa HOM05D000012 ORTHO05D000804 7.4e-06 54.3 49 55.1
AUR62016507 Chenopodium quinoa HOM05D000012 ORTHO05D000804 7.4e-06 54.3 49 55.1
Cc08_g09280 Coffea canephora HOM05D000012 ORTHO05D010643 7.4e-06 54.3 69 44.9
DCAR_007713 Daucus carota HOM05D000012 ORTHO05D000804 7.4e-06 54.3 52 50.0
Duzib177G0450 Durio zibethinus HOM05D000012 ORTHO05D000804 7.4e-06 54.3 64 45.3
Medtr1g026740 Medicago truncatula HOM05D000012 ORTHO05D000804 7.4e-06 54.3 61 49.2
Sed0020038 Sechium edule HOM05D000012 ORTHO05D000804 7.4e-06 54.3 83 42.2
Aa31LG3G15630 Aethionema arabicum HOM05D000012 ORTHO05D016460 9.6e-06 53.9 52 50.0
CANSAT02G0007 Cannabis sativa HOM05D000012 ORTHO05D000804 9.6e-06 53.9 60 48.3
Cc04_g02930 Coffea canephora HOM05D000012 ORTHO05D000804 9.6e-06 53.9 49 61.2
MELO3C011149.2 Cucumis melo HOM05D000012 ORTHO05D000804 9.6e-06 53.9 75 44.0
Lj7A656T59 Lonicera japonica HOM05D000012 ORTHO05D000804 9.6e-06 53.9 64 42.2
MD15G1190800 Malus domestica HOM05D000012 ORTHO05D000804 9.6e-06 53.9 48 58.3
Medtr1g026770 Medicago truncatula HOM05D000012 ORTHO05D000804 9.6e-06 53.9 81 40.7
Oeu029645.1 Olea europaea HOM05D000012 ORTHO05D000804 9.6e-06 53.9 65 46.2
Potri.006G240000 Populus trichocarpa HOM05D000012 ORTHO05D000804 9.6e-06 53.9 71 47.9
THA.LOC104817979 Tarenaya hassleriana HOM05D000012 ORTHO05D000804 9.6e-06 53.9 78 39.7


User provided reference genes

Program Settings