Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0037900 Salix brachista HOM05D003631 ORTHO05D004219 8.8e-43 176.4 81 100.0
Potri.018G037100 Populus trichocarpa HOM05D003631 ORTHO05D004219 3.1e-19 98.2 50 86.0
Thecc.09G039600 Theobroma cacao HOM05D003631 ORTHO05D004219 2.2e-17 92.0 55 69.1
CiPaw.07G207400 Carya illinoinensis HOM05D003631 ORTHO05D004219 2.9e-17 91.7 55 69.1
CiPaw.08G023400 Carya illinoinensis HOM05D003631 ORTHO05D004219 2.9e-17 91.7 53 69.8
Actinidia15729 Actinidia chinensis HOM05D003631 ORTHO05D004219 3.7e-17 91.3 53 69.8
Cfa013342 Carpinus fangiana HOM05D003631 ORTHO05D004219 3.7e-17 91.3 53 69.8
Rhsim07G0153300 Rhododendron simsii HOM05D003631 ORTHO05D004219 3.7e-17 91.3 49 75.5
Sc09g0009080 Simmondsia chinensis HOM05D003631 ORTHO05D004219 3.7e-17 91.3 55 72.7
CAN.G309.79 Capsicum annuum HOM05D003631 ORTHO05D004219 4.9e-17 90.9 58 65.5
COL.COLO4_18699 Corchorus olitorius HOM05D003631 ORTHO05D004219 6.4e-17 90.5 55 69.1
Duzib150G0491 Durio zibethinus HOM05D003631 ORTHO05D004219 6.4e-17 90.5 55 67.3
Glyma.14G141500 Glycine max HOM05D003631 ORTHO05D004219 8.3e-17 90.1 78 55.1
TPR.G32527 Trifolium pratense HOM05D003631 ORTHO05D004219 8.3e-17 90.1 78 50.0
Nitab4.5_0001567g0050 Nicotiana tabacum HOM05D003631 ORTHO05D004219 1.1e-16 89.7 58 65.5
Gorai.004G290800 Gossypium raimondii HOM05D003631 ORTHO05D004219 1.4e-16 89.4 55 65.5
Hund03439 Selenicereus undatus HOM05D003631 ORTHO05D004219 1.4e-16 89.4 55 69.1
TWI63G0861 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 2.4e-16 88.6 50 72.0
Ciclev10009403m.g Citrus clementina HOM05D003631 ORTHO05D004219 3.2e-16 88.2 78 55.1
Solyc11g071330.3 Solanum lycopersicum HOM05D003631 ORTHO05D004219 3.2e-16 88.2 49 69.4
Sopen11g029010 Solanum pennellii HOM05D003631 ORTHO05D004219 3.2e-16 88.2 49 69.4
PGSC0003DMG400018567 Solanum tuberosum HOM05D003631 ORTHO05D004219 3.2e-16 88.2 49 69.4
unitig_578.g16597 Utricularia gibba HOM05D003631 ORTHO05D004219 3.2e-16 88.2 47 74.5
Phvul.001G078701 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 4.1e-16 87.8 53 67.9
TWI34G0985 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 4.1e-16 87.8 55 65.5
GSVIVG01035673001 Vitis vinifera HOM05D003631 ORTHO05D004219 5.4e-16 87.4 55 67.3
Ah.16g105220 Amaranthus hybridus HOM05D003631 ORTHO05D004219 7.0e-16 87.0 51 72.5
AUR62023018 Chenopodium quinoa HOM05D003631 ORTHO05D004219 7.0e-16 87.0 53 71.7
Gohir.A08G250900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 7.0e-16 87.0 55 63.6
Gohir.D08G272400 Gossypium hirsutum HOM05D003631 ORTHO05D004219 7.0e-16 87.0 55 63.6
Nitab4.5_0000664g0300 Nicotiana tabacum HOM05D003631 ORTHO05D004219 7.0e-16 87.0 50 68.0
MSTRG.1652 Avicennia marina HOM05D003631 ORTHO05D004219 9.2e-16 86.7 44 79.5
Lsat_1_v5_gn_1_49860 Lactuca sativa HOM05D003631 ORTHO05D004219 9.2e-16 86.7 58 62.1
Psat6g034240 Pisum sativum HOM05D003631 ORTHO05D004219 9.2e-16 86.7 78 47.4
Ciclev10009440m.g Citrus clementina HOM05D003631 ORTHO05D004219 1.6e-15 85.9 58 63.8
Eucgr.C03819 Eucalyptus grandis HOM05D003631 ORTHO05D004219 1.6e-15 85.9 76 53.9
QL12p026384 Quercus lobata HOM05D003631 ORTHO05D004219 1.6e-15 85.9 50 72.0
RcHm_v2.0_Chr6g0305731 Rosa chinensis HOM05D003631 ORTHO05D004219 1.6e-15 85.9 50 72.0
Migut.E01509 Erythranthe guttata HOM05D003631 ORTHO05D004219 2.0e-15 85.5 44 79.5
arahy.Tifrunner.gnm1.ann1.YQ2GF9 Arachis hypogaea HOM05D003631 ORTHO05D004219 2.7e-15 85.1 79 49.4
EL10Ac2g04076 Beta vulgaris HOM05D003631 ORTHO05D004219 2.7e-15 85.1 53 67.9
COL.COLO4_34847 Corchorus olitorius HOM05D003631 ORTHO05D004219 2.7e-15 85.1 53 66.0
FAN15G1152 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.7e-15 85.1 50 72.0
FAN20G1208 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.7e-15 85.1 50 72.0
Nn8g39151 Nelumbo nucifera HOM05D003631 ORTHO05D004219 2.7e-15 85.1 58 56.9
GSVIVG01015380001 Vitis vinifera HOM05D003631 ORTHO05D004219 2.7e-15 85.1 76 53.9
Cc06_g09780 Coffea canephora HOM05D003631 ORTHO05D004219 3.5e-15 84.7 58 65.5
Dinv36643 Davidia involucrata HOM05D003631 ORTHO05D004219 3.5e-15 84.7 51 68.6
ECA248G3192 Erigeron canadensis HOM05D003631 ORTHO05D004219 3.5e-15 84.7 55 69.1
FvH4_2g36140 Fragaria vesca HOM05D003631 ORTHO05D004219 3.5e-15 84.7 50 70.0
FAN27G1133 Fragaria x ananassa HOM05D003631 ORTHO05D004219 3.5e-15 84.7 50 70.0
Hma1.2p1_1151F.1_g262060 Hydrangea macrophylla HOM05D003631 ORTHO05D004219 3.5e-15 84.7 57 64.9
VMungo0647G2237 Vigna mungo HOM05D003631 ORTHO05D004219 3.5e-15 84.7 51 70.6
arahy.Tifrunner.gnm1.ann1.T1GT7D Arachis hypogaea HOM05D003631 ORTHO05D004219 4.6e-15 84.3 79 49.4
Potri.006G242700 Populus trichocarpa HOM05D003631 ORTHO05D004219 4.6e-15 84.3 50 72.0
Prupe.7G232500 Prunus persica HOM05D003631 ORTHO05D004219 4.6e-15 84.3 58 63.8
Thecc.09G108900 Theobroma cacao HOM05D003631 ORTHO05D004219 4.6e-15 84.3 76 52.6
CARHR100800 Cardamine hirsuta HOM05D003631 ORTHO05D004219 6.0e-15 84.0 77 54.5
Ca_12813_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 6.0e-15 84.0 78 47.4
Lj7A652G70 Lonicera japonica HOM05D003631 ORTHO05D004219 6.0e-15 84.0 50 68.0
Manes.03G062700 Manihot esculenta HOM05D003631 ORTHO05D004219 6.0e-15 84.0 48 75.0
SalBow1G6702 Salvia bowleyana HOM05D003631 ORTHO05D004219 6.0e-15 84.0 54 64.8
CANSAT56G0429 Cannabis sativa HOM05D003631 ORTHO05D004219 7.8e-15 83.6 55 63.6
Medtr1g008350 Medicago truncatula HOM05D003631 ORTHO05D004219 7.8e-15 83.6 78 48.7
THA.LOC104804593 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 7.8e-15 83.6 77 53.2
TAR636G2591 Trochodendron aralioides HOM05D003631 ORTHO05D004219 7.8e-15 83.6 48 70.8
Lj1g0005663 Lotus japonicus HOM05D003631 ORTHO05D004219 1.0e-14 83.2 78 47.4
AL3G40110 Arabidopsis lyrata HOM05D003631 ORTHO05D004219 1.3e-14 82.8 77 53.2
CANSAT56G1660 Cannabis sativa HOM05D003631 ORTHO05D004219 1.7e-14 82.4 58 63.8
AT3G24570 Arabidopsis thaliana HOM05D003631 ORTHO05D004219 2.3e-14 82.0 62 58.1
MD02G1045400 Malus domestica HOM05D003631 ORTHO05D004219 2.3e-14 82.0 58 60.3
Carub.0003s2496 Capsella rubella HOM05D003631 ORTHO05D004219 3.0e-14 81.6 77 53.2
Duzib150G1599 Durio zibethinus HOM05D003631 ORTHO05D004219 3.0e-14 81.6 76 52.6
MBI04_g29968_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 3.0e-14 81.6 53 66.0
Duzib187G0575 Durio zibethinus HOM05D003631 ORTHO05D004219 3.9e-14 81.3 55 61.8
Gohir.A06G063200 Gossypium hirsutum HOM05D003631 ORTHO05D004219 3.9e-14 81.3 53 62.3
Gohir.D06G061900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 3.9e-14 81.3 53 62.3
Gorai.010G072100 Gossypium raimondii HOM05D003631 ORTHO05D004219 3.9e-14 81.3 53 62.3
MD15G1098000 Malus domestica HOM05D003631 ORTHO05D004219 3.9e-14 81.3 55 61.8
Oeu014652.1 Olea europaea HOM05D003631 ORTHO05D004219 3.9e-14 81.3 56 64.3
Oeu014653.1 Olea europaea HOM05D003631 ORTHO05D004219 3.9e-14 81.3 56 64.3
arahy.Tifrunner.gnm1.ann1.05GVWZ Arachis hypogaea HOM05D003631 ORTHO05D004219 5.0e-14 80.9 58 56.9
arahy.Tifrunner.gnm1.ann1.AAYU95 Arachis hypogaea HOM05D003631 ORTHO05D004219 5.0e-14 80.9 58 56.9
Nn2g11722 Nelumbo nucifera HOM05D003631 ORTHO05D004219 6.6e-14 80.5 53 62.3
TAR624G0826 Trochodendron aralioides HOM05D003631 ORTHO05D004219 6.6e-14 80.5 46 71.7
MSTRG.14009 Avicennia marina HOM05D003631 ORTHO05D004219 8.6e-14 80.1 46 73.9
Cpa.g.sc23.96 Carica papaya HOM05D003631 ORTHO05D004219 8.6e-14 80.1 83 48.2
Sed0024476 Sechium edule HOM05D003631 ORTHO05D004219 8.6e-14 80.1 76 52.6
BcaC06g35727 Brassica carinata HOM05D003631 ORTHO05D004219 1.1e-13 79.7 77 49.4
C07p11590 Brassica napus HOM05D003631 ORTHO05D004219 1.1e-13 79.7 77 49.4
Lj7A707G38 Lonicera japonica HOM05D003631 ORTHO05D004219 1.1e-13 79.7 54 63.0
Peaxi162Scf00231g00034 Petunia axillaris HOM05D003631 ORTHO05D004219 1.1e-13 79.7 47 66.0
THA.LOC104821638 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 1.1e-13 79.7 77 50.6
HPP92_000527 Vanilla planifolia HOM05D003631 ORTHO05D004219 1.1e-13 79.7 48 66.7
Eucgr.C02890 Eucalyptus grandis HOM05D003631 ORTHO05D004219 1.5e-13 79.3 45 73.3
PGR044G0672 Punica granatum HOM05D003631 ORTHO05D004219 1.5e-13 79.3 47 68.1
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 1.5e-13 79.3 44 75.0
Gohir.D05G025300 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.9e-13 79.0 76 46.1
Gorai.009G025400 Gossypium raimondii HOM05D003631 ORTHO05D004219 1.9e-13 79.0 76 46.1
Sp3g22360 Schrenkiella parvula HOM05D003631 ORTHO05D004219 1.9e-13 79.0 77 50.6
BraA07t28564Z Brassica rapa HOM05D003631 ORTHO05D004219 2.5e-13 78.6 65 55.4
ClCG11G002440 Citrullus lanatus HOM05D003631 ORTHO05D004219 2.5e-13 78.6 48 70.8
Lsat_1_v5_gn_6_11000 Lactuca sativa HOM05D003631 ORTHO05D004219 2.5e-13 78.6 55 58.2
A07p07710 Brassica napus HOM05D003631 ORTHO05D004219 3.3e-13 78.2 66 54.5
FAN26G2044 Fragaria x ananassa HOM05D003631 ORTHO05D004219 3.3e-13 78.2 58 60.3
BcaB06g26661 Brassica carinata HOM05D003631 ORTHO05D004219 4.3e-13 77.8 67 53.7
MELO3C004559.2 Cucumis melo HOM05D003631 ORTHO05D004219 4.3e-13 77.8 44 75.0
Thhalv10002655m.g Eutrema salsugineum HOM05D003631 ORTHO05D004219 4.3e-13 77.8 77 49.4
Manes.16G114800 Manihot esculenta HOM05D003631 ORTHO05D004219 4.3e-13 77.8 45 71.1
PSO063G0959 Papaver somniferum HOM05D003631 ORTHO05D004219 4.3e-13 77.8 67 52.2
RcHm_v2.0_Chr2g0090261 Rosa chinensis HOM05D003631 ORTHO05D004219 4.3e-13 77.8 49 65.3
vmacro06223 Vaccinium macrocarpon HOM05D003631 ORTHO05D004219 4.3e-13 77.8 76 48.7
VMungo0331G0778 Vigna mungo HOM05D003631 ORTHO05D004219 4.3e-13 77.8 53 56.6
Gohir.A05G023800 Gossypium hirsutum HOM05D003631 ORTHO05D004219 5.6e-13 77.4 55 52.7
MBI01_g28041_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 5.6e-13 77.4 46 67.4
SalBow4G1124 Salvia bowleyana HOM05D003631 ORTHO05D004219 5.6e-13 77.4 55 54.5
THA.LOC104815150 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 5.6e-13 77.4 46 67.4
HanXRQChr01g0029581 Helianthus annuus HOM05D003631 ORTHO05D004219 7.3e-13 77.0 40 75.0
Os01g0228300 Oryza sativa ssp. japonica HOM05D003631 ORTHO05D004219 7.3e-13 77.0 43 67.4
BcaC01g03273 Brassica carinata HOM05D003631 ORTHO05D004219 9.5e-13 76.6 79 46.8
A03p43790 Brassica napus HOM05D003631 ORTHO05D004219 9.5e-13 76.6 77 48.1
PSO210G4261 Papaver somniferum HOM05D003631 ORTHO05D004219 9.5e-13 76.6 56 57.1
PSO210G6180 Papaver somniferum HOM05D003631 ORTHO05D004219 9.5e-13 76.6 56 57.1
Prupe.1G452800 Prunus persica HOM05D003631 ORTHO05D004219 9.5e-13 76.6 44 72.7
Zm00001eb339190 Zea mays HOM05D003631 ORTHO05D004219 9.5e-13 76.6 48 60.4
CsaV3_2G002230 Cucumis sativus L. HOM05D003631 ORTHO05D004219 1.2e-12 76.3 40 80.0
Oeu012180.1 Olea europaea HOM05D003631 ORTHO05D004219 1.2e-12 76.3 45 68.9
Phvul.010G165700 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 1.2e-12 76.3 53 54.7
Rhsim03G0240900 Rhododendron simsii HOM05D003631 ORTHO05D004219 1.2e-12 76.3 82 45.1
BraA03t13514Z Brassica rapa HOM05D003631 ORTHO05D004219 1.6e-12 75.9 79 46.8
Lalb_Chr11g0064321 Lupinus albus HOM05D003631 ORTHO05D004219 1.6e-12 75.9 56 60.7
DCAR_024691 Daucus carota HOM05D003631 ORTHO05D004219 2.1e-12 75.5 41 80.5
DCAR_031967 Daucus carota HOM05D003631 ORTHO05D004219 2.1e-12 75.5 41 80.5
FAN28G0644 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.1e-12 75.5 49 61.2
C03p54110 Brassica napus HOM05D003631 ORTHO05D004219 2.8e-12 75.1 44 65.9
FAN19G0016 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.8e-12 75.1 49 61.2
Sabra18G0068700 Salix brachista HOM05D003631 ORTHO05D004219 2.8e-12 75.1 43 69.8
Sc08g0007510 Simmondsia chinensis HOM05D003631 ORTHO05D004219 2.8e-12 75.1 55 56.4
HanXRQChr10g0313001 Helianthus annuus HOM05D003631 ORTHO05D004219 3.6e-12 74.7 49 65.3
PSO782G4304 Papaver somniferum HOM05D003631 ORTHO05D004219 3.6e-12 74.7 40 77.5
PSO832G3257 Papaver somniferum HOM05D003631 ORTHO05D004219 3.6e-12 74.7 40 77.5
Aa31sc29G40 Aethionema arabicum HOM05D003631 ORTHO05D004219 4.7e-12 74.3 44 63.6
FAN23G2002 Fragaria x ananassa HOM05D003631 ORTHO05D004219 4.7e-12 74.3 49 59.2
FvH4_1g04560 Fragaria vesca HOM05D003631 ORTHO05D004219 6.2e-12 73.9 49 59.2
Potri.018G081600 Populus trichocarpa HOM05D003631 ORTHO05D004219 6.2e-12 73.9 43 69.8
Glyma.13G074500 Glycine max HOM05D003631 ORTHO05D004219 1.1e-11 73.2 53 52.8
HanXRQChr02g0048081 Helianthus annuus HOM05D003631 ORTHO05D004219 1.1e-11 73.2 49 55.1
Aqoxy7G03847 Aquilegia oxysepala HOM05D003631 ORTHO05D004219 2.3e-11 72.0 53 52.8
Medtr8g103490 Medicago truncatula HOM05D003631 ORTHO05D004219 5.2e-11 70.9 56 50.0
SGA_v2.0_scaffold163G38087 Striga asiatica HOM05D003631 ORTHO05D004219 6.8e-11 70.5 55 61.8
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 1.2e-10 69.7 46 65.2
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 1.5e-10 69.3 42 64.3
TPR.G23442 Trifolium pratense HOM05D003631 ORTHO05D004219 2.0e-10 68.9 76 44.7
Glyma.05G230802 Glycine max HOM05D003631 ORTHO05D004219 2.6e-10 68.6 45 57.8
Psat7g013480 Pisum sativum HOM05D003631 ORTHO05D004219 2.6e-10 68.6 47 57.4
Lalb_Chr09g0331201 Lupinus albus HOM05D003631 ORTHO05D004219 3.4e-10 68.2 55 54.5
Ca_17334_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 4.4e-10 67.8 47 55.3
Lalb_Chr05g0222891 Lupinus albus HOM05D003631 ORTHO05D004219 7.5e-10 67.0 57 50.9
TPR.G24312 Trifolium pratense HOM05D000659 ORTHO05D000505 7.5e-10 67.0 47 55.3
Lj4g0024734 Lotus japonicus HOM05D003631 ORTHO05D004219 1.3e-09 66.2 53 50.9
Dinv41613 Davidia involucrata HOM05D003631 ORTHO05D004219 8.3e-09 63.5 55 52.7
SEGI_07691 Sequoiadendron giganteum HOM05D003631 ORTHO05D004219 8.3e-09 63.5 60 48.3
Ciclev10010528m.g Citrus clementina HOM05D003631 ORTHO05D004219 2.4e-08 62.0 43 60.5
Glyma.08G038300 Glycine max HOM05D003631 ORTHO05D004219 3.5e-07 58.2 32 68.8
BcaB03g14575 Brassica carinata HOM05D003631 ORTHO05D004219 4.6e-07 57.8 32 62.5
TPR.G23483 Trifolium pratense HOM05D000002 ORTHO05D006339 5.1e-06 54.3 68 41.2


User provided reference genes

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