Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 2.6e-39 164.9 80 100.0
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 7.0e-16 87.0 73 63.0
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.9e-13 79.0 73 60.3
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.0e-11 73.2 72 50.0
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 5.2e-11 70.9 53 58.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 3.3e-10 68.2 53 52.8
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 9.7e-10 66.6 67 44.8
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.3e-09 66.2 72 45.8
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.7e-09 65.9 53 58.5
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 2.8e-09 65.1 64 46.9
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 2.8e-09 65.1 64 46.9
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 6.3e-09 63.9 53 56.6
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 6.3e-09 63.9 53 50.9
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.2e-09 63.5 70 41.4
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 8.2e-09 63.5 53 58.5
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-08 63.2 53 52.8
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-08 63.2 53 52.8
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.4e-08 62.8 53 52.8
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.8e-08 62.4 76 39.5
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.8e-08 62.4 53 52.8
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.8e-08 62.4 64 46.9
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.8e-08 62.4 65 47.7
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 3.1e-08 61.6 53 54.7
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 4.1e-08 61.2 53 56.6
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 5.3e-08 60.8 53 50.9
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.3e-08 60.8 67 40.3
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 9.1e-08 60.1 53 47.2
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 9.1e-08 60.1 53 50.9
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.2e-07 59.7 53 58.5
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.2e-07 59.7 53 58.5
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.2e-07 59.7 53 58.5
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 2.0e-07 58.9 53 49.1
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 2.0e-07 58.9 61 47.5
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 2.7e-07 58.5 76 35.5
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 3.5e-07 58.2 56 53.6
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.5e-07 58.2 53 56.6
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 3.5e-07 58.2 68 44.1
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 3.5e-07 58.2 61 47.5
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 5.9e-07 57.4 53 49.1
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 5.9e-07 57.4 64 43.8
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.0e-06 56.6 54 46.3
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.0e-06 56.6 53 47.2
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.3e-06 56.2 61 44.3
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-06 55.8 64 43.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 1.7e-06 55.8 74 44.6
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.2e-06 55.5 68 41.2
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 2.9e-06 55.1 64 39.1
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 3.8e-06 54.7 54 46.3
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 3.8e-06 54.7 54 46.3
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 3.8e-06 54.7 54 44.4
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 3.8e-06 54.7 53 50.9
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 5.0e-06 54.3 71 39.4
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 5.0e-06 54.3 58 48.3
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 5.0e-06 54.3 53 50.9
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 6.5e-06 53.9 53 45.3
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 8.5e-06 53.5 51 52.9
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 8.5e-06 53.5 72 36.1


User provided reference genes

Program Settings