Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 3.2e-56 221.5 107 100.0
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 2.0e-50 202.2 107 93.5
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 3.7e-49 198.0 107 91.6
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 2.1e-47 192.2 107 86.9
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 2.1e-47 192.2 106 88.7
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.3e-46 189.5 107 87.9
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.0e-46 188.3 107 86.9
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.0e-46 188.3 107 86.9
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 3.0e-46 188.3 107 86.9
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.1e-45 186.4 107 85.0
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 1.5e-45 186.0 107 85.0
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.9e-45 185.7 105 87.6
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.5e-45 185.3 107 85.0
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 2.5e-45 185.3 107 85.0
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.3e-45 184.9 107 84.1
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 5.6e-45 184.1 107 84.1
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 5.6e-45 184.1 105 87.6
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 5.6e-45 184.1 105 87.6
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.3e-45 183.7 107 84.1
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 9.5e-45 183.3 107 83.2
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.2e-44 183.0 107 85.0
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 1.2e-44 183.0 107 83.2
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 1.2e-44 183.0 107 82.2
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.2e-44 183.0 107 85.0
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.1e-44 182.2 105 85.7
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 2.1e-44 182.2 106 84.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 2.1e-44 182.2 112 81.2
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 2.1e-44 182.2 107 85.0
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 3.6e-44 181.4 107 84.1
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 4.7e-44 181.0 107 82.2
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 4.7e-44 181.0 107 82.2
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 6.2e-44 180.6 107 84.1
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 6.2e-44 180.6 106 81.1
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 8.1e-44 180.3 104 85.6
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 8.1e-44 180.3 107 83.2
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 1.1e-43 179.9 107 82.2
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 1.1e-43 179.9 107 81.3
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 1.4e-43 179.5 107 81.3
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.8e-43 179.1 107 82.2
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.4e-43 178.7 107 83.2
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 2.4e-43 178.7 106 82.1
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 3.1e-43 178.3 107 81.3
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 3.1e-43 178.3 107 81.3
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 3.1e-43 178.3 107 82.2
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 4.0e-43 177.9 107 80.4
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 6.8e-43 177.2 106 81.1
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 1.5e-42 176.0 107 81.3
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 2.6e-42 175.3 103 83.5
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 4.4e-42 174.5 106 79.2
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 4.4e-42 174.5 105 81.0
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 4.4e-42 174.5 107 79.4
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 7.6e-42 173.7 106 79.2
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 9.9e-42 173.3 105 80.0
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 1.3e-41 172.9 105 80.0
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 1.7e-41 172.6 107 75.7
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 1.7e-41 172.6 107 78.5
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.9e-41 171.8 98 84.7
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 3.8e-41 171.4 106 79.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 4.9e-41 171.0 114 75.4
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 8.4e-41 170.2 104 78.8
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 8.4e-41 170.2 104 80.8
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.1e-40 169.9 105 80.0
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.1e-40 169.9 105 77.1
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 1.4e-40 169.5 107 78.5
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.9e-40 169.1 97 84.5
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 3.2e-40 168.3 104 78.8
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 4.1e-40 167.9 104 78.8
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 5.4e-40 167.5 103 79.6
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 7.1e-40 167.2 96 86.5
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 1.6e-39 166.0 105 76.2
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 2.1e-39 165.6 104 77.9
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 2.7e-39 165.2 103 77.7
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 2.7e-39 165.2 103 77.7
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 7.8e-39 163.7 104 76.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 1.0e-38 163.3 98 82.7
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 3.9e-38 161.4 105 72.4
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 3.9e-38 161.4 103 74.8
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 3.9e-38 161.4 105 71.4
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 8.6e-38 160.2 104 71.2
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.1e-37 159.8 104 71.2
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 1.9e-37 159.1 105 70.5
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 2.5e-37 158.7 104 72.1
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 5.6e-37 157.5 109 75.2
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.2e-36 156.4 103 70.9
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.2e-36 156.4 103 70.9
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.2e-36 156.4 103 70.9
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.2e-36 156.4 103 70.9
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 1.6e-36 156.0 105 71.4
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 4.7e-36 154.5 102 70.6
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 6.2e-36 154.1 105 74.3
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 8.1e-36 153.7 102 70.6
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 1.1e-35 153.3 103 69.9
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 1.4e-35 152.9 103 68.9
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 3.1e-35 151.8 102 69.6
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 9.0e-35 150.2 105 68.6
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 1.5e-34 149.4 102 67.6
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 5.8e-34 147.5 105 68.6
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.1e-31 139.0 104 63.5
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 6.0e-31 137.5 96 67.7
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 5.1e-30 134.4 78 87.2
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 6.6e-30 134.0 78 85.9
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.9e-29 132.5 78 83.3
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.9e-29 132.5 105 61.0
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 7.3e-29 130.6 105 59.0
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 2.1e-28 129.0 70 87.1
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.1e-28 129.0 76 85.5
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.8e-28 128.6 75 84.0
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 1.4e-27 126.3 70 81.4
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.4e-27 125.6 104 54.8
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 3.1e-27 125.2 103 50.5
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 4.0e-27 124.8 78 79.5
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 1.2e-26 123.2 75 81.3
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.0e-26 122.5 79 75.9
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 9.9e-26 120.2 97 60.8
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 1.7e-25 119.4 76 76.3
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.4e-24 116.3 75 74.7
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.2e-23 113.2 103 48.5
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 4.6e-23 111.3 104 61.5
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.0e-22 108.6 68 67.6
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 3.7e-20 101.7 68 77.9
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 4.8e-20 101.3 68 79.4
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.5e-10 69.7 58 60.3
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 4.9e-09 64.7 33 93.9
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 8.4e-09 63.9 42 71.4
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.1e-08 63.5 40 75.0
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 1.9e-08 62.8 39 74.4
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 1.0e-06 57.0 34 73.5


User provided reference genes

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