Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 6.0e-169 597.4 302 100.0
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 7.7e-100 367.9 316 65.2
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 7.3e-74 281.6 279 53.8
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 2.1e-73 280.0 301 51.5
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 5.2e-72 275.4 299 50.8
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 4.4e-71 272.3 279 52.3
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.7e-70 270.4 275 53.8
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 2.2e-70 270.0 296 50.3
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.9e-70 269.6 306 49.7
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 2.9e-70 269.6 306 49.0
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.4e-70 268.5 306 50.0
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 1.1e-69 267.7 275 53.1
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.4e-69 267.3 299 50.8
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 2.4e-69 266.5 291 51.2
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 3.2e-69 266.2 275 52.0
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 3.2e-69 266.2 277 53.1
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 3.2e-69 266.2 305 50.5
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 5.4e-69 265.4 299 50.5
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 7.0e-69 265.0 291 51.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 2.0e-68 263.5 275 53.5
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 2.7e-68 263.1 283 51.6
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 3.5e-68 262.7 283 51.6
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 6.0e-68 261.9 279 52.0
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 7.8e-68 261.5 280 51.8
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.7e-67 260.4 280 50.7
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 2.3e-67 260.0 300 50.0
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 2.3e-67 260.0 303 49.5
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 2.3e-67 260.0 298 49.0
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.3e-67 260.0 298 49.7
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 3.0e-67 259.6 274 51.8
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 5.0e-67 258.8 273 49.5
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 8.6e-67 258.1 292 50.7
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.5e-66 257.3 277 52.0
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 1.5e-66 257.3 300 48.0
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.9e-66 256.9 299 47.5
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 2.5e-66 256.5 306 47.1
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 3.3e-66 256.1 299 47.8
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 3.3e-66 256.1 301 47.8
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 9.5e-66 254.6 303 49.2
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.2e-65 254.2 299 48.2
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.2e-65 254.2 299 48.2
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.6e-65 253.8 283 50.9
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 1.6e-65 253.8 299 48.2
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 2.8e-65 253.1 292 48.6
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.8e-65 253.1 299 47.5
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 4.7e-65 252.3 308 49.0
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 6.2e-65 251.9 284 49.6
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 6.2e-65 251.9 279 50.2
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 8.1e-65 251.5 287 50.5
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.4e-64 250.8 303 47.9
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 1.4e-64 250.8 273 52.0
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 1.8e-64 250.4 295 48.1
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 5.2e-64 248.8 291 47.8
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 8.9e-64 248.1 296 47.3
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 8.9e-64 248.1 290 46.9
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 8.9e-64 248.1 279 49.5
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.2e-63 247.7 278 50.4
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 1.2e-63 247.7 290 48.3
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.5e-63 247.3 301 46.8
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.5e-63 247.3 275 48.0
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 2.0e-63 246.9 272 47.8
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 2.6e-63 246.5 300 47.0
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.6e-63 246.5 297 48.1
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 3.4e-63 246.1 270 50.7
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 4.4e-63 245.7 265 50.2
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 5.8e-63 245.4 279 48.4
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 7.5e-63 245.0 299 46.5
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.7e-62 243.8 278 47.5
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 4.9e-62 242.3 289 47.4
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 4.9e-62 242.3 279 48.4
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 6.4e-62 241.9 279 48.4
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 3.2e-61 239.6 306 46.1
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.7e-60 236.5 264 49.2
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 6.0e-60 235.3 265 51.7
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 7.8e-60 235.0 279 47.3
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 1.0e-59 234.6 275 48.0
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 3.0e-59 233.0 265 46.4
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 5.1e-59 232.3 265 47.2
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 2.5e-58 229.9 282 45.0
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 4.3e-58 229.2 267 47.9
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 9.5e-58 228.0 287 45.6
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 1.2e-57 227.6 276 44.6
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 2.1e-57 226.9 289 45.3
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 6.2e-57 225.3 275 45.1
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 8.9e-56 221.5 256 47.7
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 8.9e-56 221.5 256 47.7
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.2e-55 221.1 293 44.0
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 1.2e-55 221.1 281 45.2
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 1.5e-55 220.7 256 47.3
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 2.0e-55 220.3 256 47.3
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 2.0e-55 220.3 256 47.3
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 2.6e-55 219.9 261 46.0
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 2.6e-55 219.9 281 45.2
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 3.4e-55 219.5 255 47.1
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 4.4e-55 219.2 256 46.9
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 4.4e-55 219.2 256 46.9
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 7.6e-55 218.4 255 46.7
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 7.6e-55 218.4 281 44.5
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 9.9e-55 218.0 256 46.5
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 9.9e-55 218.0 256 46.5
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 1.3e-54 217.6 256 45.7
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 8.4e-54 214.9 279 45.5
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.1e-53 214.5 280 43.9
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 2.4e-53 213.4 256 46.1
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 2.4e-53 213.4 256 46.1
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 2.4e-53 213.4 256 46.1
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 9.2e-53 211.5 274 43.4
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.6e-52 210.7 324 41.0
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.6e-52 210.7 275 44.7
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 2.7e-52 209.9 274 42.7
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 4.6e-52 209.1 294 41.8
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 3.9e-51 206.1 325 40.3
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 4.3e-50 202.6 119 77.3
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.2e-49 201.1 134 70.1
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 1.6e-49 200.7 274 41.6
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 1.4e-48 197.6 127 74.0
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.2e-47 194.5 151 64.9
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.5e-47 194.1 149 65.1
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 2.4e-45 186.8 149 61.7
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 5.4e-45 185.7 255 42.4
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 3.0e-43 179.9 151 58.9
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 6.6e-43 178.7 283 39.2
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 8.7e-43 178.3 124 68.5
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 2.5e-42 176.8 282 39.0
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 3.3e-42 176.4 283 38.9
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 7.3e-42 175.3 256 39.8
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.2e-39 167.9 233 41.2
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.7e-38 164.1 103 73.8
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.9e-37 160.6 227 41.0
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.7e-30 137.5 228 38.6
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 1.8e-27 127.5 217 35.5
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 9.6e-26 121.7 131 51.1
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 9.6e-26 121.7 131 51.1
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 1.6e-25 120.9 225 34.7
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 4.8e-25 119.4 199 33.7
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 8.1e-25 118.6 231 33.8
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 3.8e-22 109.8 73 67.1
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 8.4e-22 108.6 199 32.2
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 4.3e-18 96.3 180 35.0
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 5.7e-18 95.9 178 34.8
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 7.4e-18 95.5 90 50.0
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 7.4e-18 95.5 69 68.1
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 6.9e-16 89.0 97 49.5
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 6.9e-16 89.0 62 67.7
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 1.7e-06 57.8 52 51.9
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 3.8e-06 56.6 51 47.1


User provided reference genes

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