Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 7.0e-90 334.0 172 100.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.3e-83 310.5 172 93.0
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.3e-79 298.5 169 90.5
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 5.8e-76 287.7 166 90.4
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 4.3e-71 271.6 166 78.9
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 5.6e-71 271.2 169 79.3
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 9.5e-71 270.4 155 83.2
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.2e-70 270.0 158 82.3
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 4.7e-70 268.1 149 84.6
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 6.2e-70 267.7 172 76.7
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.1e-69 266.9 158 81.6
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.4e-69 266.5 167 79.0
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.4e-69 266.5 149 85.2
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.4e-69 266.5 149 85.2
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.4e-69 266.5 172 76.7
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.1e-69 265.4 166 77.7
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 3.1e-69 265.4 166 78.9
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 4.0e-69 265.0 149 84.6
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 6.8e-69 264.2 149 83.9
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 6.8e-69 264.2 149 84.6
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 6.8e-69 264.2 149 83.9
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 8.9e-69 263.8 166 77.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 8.9e-69 263.8 152 82.9
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 8.9e-69 263.8 152 82.9
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.2e-68 263.5 166 76.5
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.5e-68 263.1 149 83.9
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.5e-68 263.1 149 83.9
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.5e-68 263.1 149 82.6
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.5e-68 263.1 166 76.5
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.5e-68 263.1 156 81.4
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.0e-68 262.7 149 83.9
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.0e-68 262.7 149 83.9
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.0e-68 262.7 166 76.5
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.6e-68 262.3 166 77.7
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.6e-68 262.3 149 83.9
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.6e-68 262.3 149 83.9
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 3.4e-68 261.9 149 83.9
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 166 78.3
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 169 76.9
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 5.8e-68 261.2 163 77.9
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 5.8e-68 261.2 149 83.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 5.8e-68 261.2 169 77.5
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 7.6e-68 260.8 149 83.2
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 7.6e-68 260.8 166 77.7
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 7.6e-68 260.8 157 79.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 7.6e-68 260.8 165 75.8
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 9.9e-68 260.4 165 75.8
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-67 260.0 149 82.6
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-67 259.6 149 83.2
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.7e-67 259.6 177 71.8
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 2.2e-67 259.2 172 75.0
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.9e-67 258.8 166 77.1
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.8e-67 258.5 171 72.5
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 3.8e-67 258.5 166 76.5
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 3.8e-67 258.5 175 72.6
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.4e-67 257.7 160 78.8
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 6.4e-67 257.7 150 82.0
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 8.4e-67 257.3 172 74.4
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 8.4e-67 257.3 168 75.6
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.1e-66 256.9 160 78.8
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 160 78.8
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 160 78.8
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 160 78.8
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 160 78.8
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.4e-66 256.5 175 70.9
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 1.4e-66 256.5 173 72.3
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.4e-66 256.5 153 81.0
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.9e-66 256.1 159 79.9
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.9e-66 256.1 160 78.8
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 4.1e-66 255.0 150 80.7
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 4.1e-66 255.0 150 80.7
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.1e-66 255.0 160 78.1
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.1e-66 255.0 166 76.5
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 4.1e-66 255.0 169 71.6
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.4e-66 254.6 160 78.1
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 5.4e-66 254.6 169 71.0
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 5.4e-66 254.6 166 75.9
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.1e-66 254.2 149 79.2
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 9.2e-66 253.8 169 74.0
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.2e-65 253.4 166 74.7
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.6e-65 253.1 154 76.6
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.6e-65 253.1 170 74.1
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.6e-65 253.1 176 71.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.6e-65 253.1 167 72.5
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.1e-65 252.7 171 71.3
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.5e-65 251.9 166 75.3
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.5e-65 251.9 166 75.3
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 3.5e-65 251.9 172 72.1
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 3.5e-65 251.9 169 72.2
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 4.6e-65 251.5 174 70.7
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 4.6e-65 251.5 173 72.8
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 6.0e-65 251.1 155 76.1
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 6.0e-65 251.1 177 69.5
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 6.0e-65 251.1 173 72.8
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 7.8e-65 250.8 172 72.1
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.0e-64 250.4 173 72.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-64 250.0 154 76.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.3e-64 250.0 160 74.4
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.3e-64 250.0 169 71.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.3e-64 250.0 171 69.6
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.7e-64 249.6 166 75.3
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.7e-64 249.6 161 74.5
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.3e-64 249.2 159 76.7
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.0e-64 248.8 174 70.7
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 3.0e-64 248.8 153 77.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.5e-63 246.5 169 69.2
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.5e-63 246.5 174 70.7
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.9e-63 246.1 149 76.5
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.9e-63 246.1 166 71.1
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 2.5e-63 245.7 172 69.8
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.3e-63 245.4 165 70.3
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 5.6e-63 244.6 149 79.2
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 5.6e-63 244.6 149 79.2
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 5.6e-63 244.6 171 68.4
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.6e-63 244.6 174 70.1
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 9.6e-63 243.8 153 75.2
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 9.6e-63 243.8 171 68.4
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.2e-62 243.4 157 75.2
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.8e-62 242.3 157 75.2
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.8e-62 242.3 165 72.7
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.8e-62 242.3 174 69.5
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 3.6e-62 241.9 171 71.3
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 6.2e-62 241.1 153 76.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-61 240.0 157 73.9
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.8e-61 239.6 155 72.3
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 3.1e-61 238.8 153 75.2
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 3.1e-61 238.8 153 75.2
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 3.1e-61 238.8 152 74.3
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 5.2e-61 238.0 153 74.5
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 6.9e-61 237.7 149 76.5
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.2e-60 236.9 171 64.9
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.4e-58 229.2 228 53.1
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.2e-58 228.8 152 71.7
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.4e-58 228.0 152 71.7
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 3.5e-57 225.3 138 76.1
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 5.1e-56 221.5 168 66.7
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 8.7e-56 220.7 143 73.4
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 5.8e-52 208.0 165 61.8
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 6.4e-51 204.5 140 70.7
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.9e-50 203.0 149 67.8
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 2.3e-48 196.1 127 73.2
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.1e-47 193.7 118 78.0
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 2.5e-47 192.6 142 63.4
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 3.1e-45 185.7 132 68.9
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 2.3e-40 169.5 111 71.2
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 3.0e-40 169.1 130 63.1
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 5.1e-40 168.3 130 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 5.6e-39 164.9 130 63.1
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 2.8e-38 162.5 108 76.9
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.8e-38 161.8 161 52.2
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 9.0e-37 157.5 130 56.9
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 2.2e-35 152.9 112 72.3
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.8e-35 152.1 149 51.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.5e-34 149.4 88 84.1
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.5e-34 148.3 167 54.5
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 4.3e-31 138.7 86 81.4
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 4.1e-29 132.1 116 55.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.2e-26 122.1 105 62.9
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.2e-25 120.6 98 64.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-24 117.1 99 57.6
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-21 107.1 118 41.5
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 4.1e-21 105.5 63 76.2
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.1e-21 104.4 163 36.2
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.0e-20 103.2 71 69.0
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.0e-20 103.2 118 42.4
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.0e-20 103.2 118 42.4
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.2e-18 94.7 152 42.1
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 4.4e-15 85.5 61 62.3
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 7.4e-15 84.7 47 74.5
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 7.4e-15 84.7 96 42.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 7.4e-15 84.7 96 42.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.1e-13 80.9 55 69.1
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 5.3e-13 78.6 95 38.9
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 4.5e-12 75.5 64 56.2
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 7.2e-10 68.2 95 40.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.2e-08 62.0 44 61.4


User provided reference genes

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