Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 0.0e+00 1337.0 662 100.0
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 0.0e+00 1295.0 663 97.0
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 0.0e+00 1110.5 627 90.1
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 2.2e-240 835.9 626 69.3
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 3.4e-233 812.0 630 67.1
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 9.2e-231 803.9 635 66.6
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 5.6e-228 794.7 624 66.3
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 7.3e-228 794.3 638 64.6
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 2.3e-221 772.7 633 63.5
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 8.7e-221 770.8 626 63.6
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 2.4e-218 762.7 629 63.3
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 2.6e-217 759.2 624 63.1
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 4.2e-215 751.9 626 64.1
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 1.2e-214 750.4 636 63.2
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 7.8e-214 747.7 625 62.4
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 3.0e-213 745.7 613 64.6
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 2.1e-211 739.6 621 61.8
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.1e-211 739.6 594 64.5
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 6.2e-211 738.0 633 61.8
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 4.5e-209 731.9 621 61.0
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 7.6e-209 731.1 641 60.5
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 4.2e-207 725.3 645 60.6
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 9.3e-207 724.2 543 69.1
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 1.6e-206 723.4 625 61.8
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 3.5e-206 722.2 634 59.9
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 1.3e-205 720.3 639 60.4
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 1.8e-205 719.9 629 61.0
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 2.8e-203 712.6 629 59.3
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 6.2e-203 711.4 620 61.3
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.1e-202 710.7 589 63.2
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-202 710.7 589 63.5
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.1e-202 710.7 628 59.7
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-202 710.3 589 63.5
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 1.4e-202 710.3 626 58.8
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.0e-202 708.8 614 61.9
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.9e-202 708.0 589 62.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 9.0e-202 707.6 615 61.5
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 9.9e-201 704.1 619 60.4
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 9.9e-201 704.1 617 60.8
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 2.2e-200 703.0 629 60.6
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 1.6e-198 696.8 625 59.8
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 2.1e-198 696.4 630 59.8
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 3.5e-198 695.7 623 59.6
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.0e-197 694.1 628 59.1
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.3e-197 693.7 638 58.0
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 2.3e-197 693.0 626 59.3
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 8.7e-197 691.0 625 57.8
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 4.3e-196 688.7 659 57.2
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.3e-195 687.2 633 58.0
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 1.6e-195 686.8 623 58.6
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 2.8e-195 686.0 622 59.5
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.8e-195 685.3 578 62.8
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 8.2e-195 684.5 607 58.8
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 1.4e-194 683.7 647 57.2
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.4e-194 683.7 627 57.9
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 1.8e-194 683.3 623 58.3
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.8e-194 683.3 630 58.1
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 3.1e-194 682.6 630 57.9
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 5.3e-194 681.8 641 56.6
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.5e-193 680.2 624 59.0
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 2.0e-193 679.9 593 59.0
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.1e-191 674.1 630 58.4
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 4.2e-191 672.2 623 57.6
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 1.2e-190 670.6 631 56.1
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 2.7e-190 669.5 504 69.4
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 6.0e-190 668.3 634 58.4
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 5.1e-189 665.2 597 60.0
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 6.7e-189 664.8 507 67.5
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 1.5e-188 663.7 512 66.4
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.9e-188 663.3 584 59.6
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 3.3e-188 662.5 593 59.0
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 2.2e-187 659.8 691 53.0
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.0e-184 651.0 620 57.4
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 2.2e-184 649.8 626 56.7
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 3.8e-184 649.0 695 51.8
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.9e-183 646.7 530 62.8
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 8.8e-181 637.9 630 55.9
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 5.7e-180 635.2 608 55.4
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 7.7e-177 624.8 488 66.2
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 2.9e-176 622.9 614 54.9
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 1.4e-175 620.5 496 65.3
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.9e-175 620.2 516 63.0
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.3e-171 607.4 614 54.6
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.8e-171 605.5 604 56.1
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.1e-170 604.4 564 58.5
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 1.1e-170 604.4 587 53.5
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 6.5e-168 595.1 516 60.9
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 1.6e-166 590.5 497 68.0
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 4.4e-164 582.4 580 54.1
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 2.2e-163 580.1 637 54.2
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 2.9e-160 569.7 473 63.4
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 3.8e-160 569.3 484 58.3
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 2.1e-158 563.5 499 56.9
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 2.5e-151 540.0 458 61.6
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.6e-150 537.3 506 56.7
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 7.0e-146 521.9 478 58.4
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 8.6e-144 515.0 449 59.9
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 1.4e-133 481.1 566 46.5
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 6.8e-133 478.8 632 44.0
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 5.8e-132 475.7 353 66.3
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 1.6e-129 467.6 652 41.4
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 1.3e-128 464.5 600 48.2
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 2.3e-120 437.2 341 64.2
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 3.9e-120 436.4 375 61.1
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 6.0e-105 386.0 405 48.6
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 4.0e-101 373.2 466 43.6
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 9.6e-95 352.1 292 62.0
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 5.3e-93 346.3 343 56.9
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 2.0e-68 264.6 344 44.2
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 8.5e-67 259.2 211 58.8
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 3.2e-66 257.3 381 39.1
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 5.1e-64 250.0 266 54.1
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.3e-63 246.9 161 73.3
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.3e-63 246.9 161 73.3
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.3e-63 246.9 161 73.3
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.3e-63 246.9 161 73.3
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 2.8e-62 244.2 183 62.3
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 1.4e-58 231.9 155 65.8
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 2.6e-55 221.1 224 58.0
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 6.3e-54 216.5 221 54.8
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 2.0e-52 211.5 192 58.3
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 4.5e-52 210.3 148 77.7
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.7e-51 208.4 277 45.5
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.1e-42 179.1 162 54.9
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 9.8e-39 166.0 143 59.4
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 3.7e-38 164.1 233 45.5
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 4.1e-37 160.6 440 29.3
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 3.2e-34 151.0 232 39.2
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-33 147.5 161 52.2
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.2e-31 142.5 148 49.3
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.7e-30 138.7 134 59.7
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 3.7e-30 137.5 376 29.0
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.2e-28 132.5 176 40.3
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 3.6e-25 120.9 72 97.2
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 8.9e-24 116.3 77 68.8
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 9.8e-23 112.8 172 37.2
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 1.1e-18 99.4 118 43.2
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 8.0e-17 93.2 160 40.0
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-16 90.1 162 34.6
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.2e-15 89.4 45 86.7
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 2.3e-11 75.1 96 54.2
Sabra17G0121600 Salix brachista HOM05D002465 ORTHO05D349170 2.5e-10 71.6 45 100.0
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 4.7e-09 67.4 69 43.5
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.8e-08 65.5 166 31.9
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.8e-08 63.5 52 61.5
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 3.4e-07 61.2 33 81.8
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 9.8e-07 59.7 33 78.8
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 1.3e-06 59.3 126 29.4


User provided reference genes

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