Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.1e-258 895.2 451 100.0
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.7e-167 593.2 498 68.7
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 3.5e-165 585.5 497 68.0
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 7.3e-163 577.8 476 68.9
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 1.6e-117 427.2 490 53.9
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 2.0e-115 420.2 484 51.0
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 1.3e-114 417.5 484 52.3
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 1.7e-114 417.2 337 66.8
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 6.3e-114 415.2 486 52.1
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 2.4e-113 413.3 484 51.9
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 2.4e-113 413.3 499 51.5
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 2.4e-113 413.3 501 50.1
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 5.3e-113 412.1 285 75.1
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 5.3e-113 412.1 478 51.7
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.0e-112 410.2 291 73.9
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 2.6e-112 409.8 497 50.5
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 3.5e-112 409.5 339 66.1
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 4.5e-112 409.1 296 71.6
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 5.9e-112 408.7 486 52.5
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 1.7e-111 407.1 285 72.6
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 3.8e-111 406.0 477 50.9
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.4e-110 404.1 332 64.5
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 3.2e-110 402.9 284 72.2
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.2e-110 402.9 487 49.5
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 3.2e-110 402.9 488 50.4
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 4.2e-110 402.5 492 50.2
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.5e-110 402.1 487 49.7
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 5.5e-110 402.1 285 72.6
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 5.5e-110 402.1 306 68.3
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 9.4e-110 401.4 492 50.4
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.6e-109 400.6 472 49.6
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 2.7e-109 399.8 487 49.3
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 3.6e-109 399.4 487 48.3
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.8e-108 397.1 486 49.6
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-108 396.0 294 69.7
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.6e-107 393.3 518 47.5
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 5.7e-107 392.1 485 49.3
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 2.2e-106 390.2 490 48.4
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 8.2e-106 388.3 487 48.7
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 2.4e-105 386.7 496 48.8
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 2.4e-105 386.7 482 48.1
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 3.1e-105 386.3 282 71.3
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 3.1e-105 386.3 495 47.1
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.1e-105 386.3 469 48.2
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 4.1e-105 386.0 472 48.9
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.2e-104 384.4 281 70.8
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 2.0e-104 383.6 282 68.4
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.6e-104 383.3 281 70.1
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 5.9e-104 382.1 286 68.2
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 7.7e-104 381.7 488 48.0
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 2.9e-103 379.8 288 69.8
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 6.5e-103 378.6 482 46.1
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.5e-102 377.5 436 51.4
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 3.2e-102 376.3 285 70.2
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 5.5e-102 375.6 460 48.0
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 9.4e-102 374.8 421 52.5
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 9.4e-102 374.8 284 68.0
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 1.6e-101 374.0 284 65.1
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.0e-100 371.3 500 47.6
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.4e-100 370.9 284 67.6
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 3.0e-100 369.8 316 63.0
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.2e-99 367.9 500 44.4
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.2e-99 367.9 460 46.3
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 3.3e-99 366.3 475 49.1
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 9.7e-99 364.8 491 47.5
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.8e-98 363.2 481 47.2
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 3.7e-98 362.8 474 47.7
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 6.3e-98 362.1 487 46.6
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.1e-97 361.3 518 42.3
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.8e-97 360.5 296 62.5
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 4.1e-97 359.4 484 44.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 7.0e-97 358.6 283 67.5
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 2.7e-96 356.7 286 65.0
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 7.7e-96 355.1 289 65.7
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 7.7e-96 355.1 289 65.7
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 1.0e-95 354.8 294 64.6
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 3.8e-95 352.8 520 45.4
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 5.0e-95 352.4 499 45.7
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 6.5e-95 352.1 289 65.1
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 8.5e-95 351.7 291 64.9
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 1.9e-94 350.5 495 45.5
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 1.9e-94 350.5 289 65.1
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 2.7e-93 346.7 285 63.2
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 4.7e-93 345.9 285 58.9
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 4.7e-93 345.9 285 58.9
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 2.0e-91 340.5 495 42.4
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 5.7e-91 339.0 497 44.7
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 1.3e-90 337.8 484 44.8
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 1.7e-90 337.4 466 42.7
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 3.7e-90 336.3 280 60.7
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 6.3e-90 335.5 493 43.6
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 2.4e-89 333.6 282 62.8
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-87 326.6 452 45.8
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 5.2e-84 315.8 278 61.5
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.6e-83 313.5 492 42.7
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 3.4e-83 313.2 252 63.1
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 1.6e-77 294.3 282 52.1
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 5.8e-75 285.8 244 64.8
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 4.9e-74 282.7 291 48.5
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 3.5e-72 276.6 289 49.5
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 1.9e-70 270.8 282 50.0
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 4.7e-69 266.2 249 57.4
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.7e-66 257.7 360 43.3
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 3.0e-63 246.9 199 67.3
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 1.1e-57 228.4 326 42.3
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 1.2e-56 224.9 307 42.0
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 2.9e-42 177.2 462 34.4
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 1.9e-41 174.5 201 53.7
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 3.6e-37 160.2 307 35.5
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 1.2e-35 155.2 79 94.9
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 7.1e-33 146.0 245 36.3
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 3.9e-31 140.2 120 63.3
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 6.7e-31 139.4 158 54.4
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 9.6e-30 135.6 114 60.5
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 1.6e-29 134.8 289 32.9
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 7.6e-27 125.9 88 61.4
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.3e-26 125.2 88 61.4
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 2.5e-25 120.9 125 56.0
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 5.5e-25 119.8 72 95.8
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.0e-23 115.5 89 61.8
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 5.1e-23 113.2 100 53.0
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 1.3e-21 108.6 121 51.2
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 3.1e-20 104.0 151 37.7
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 5.3e-20 103.2 71 70.4
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 2.2e-18 97.8 327 26.9
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 2.2e-18 97.8 181 37.0
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.1e-17 95.5 57 73.7
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-16 92.0 162 35.2
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 9.7e-14 82.4 91 57.1
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 3.4e-11 73.9 90 46.7
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-10 71.2 40 75.0
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 1.4e-09 68.6 41 70.7
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 4.2e-09 67.0 36 72.2
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.2e-08 65.5 166 31.9
Sabra17G0121600 Salix brachista HOM05D002465 ORTHO05D349170 1.0e-07 62.4 41 97.6


User provided reference genes

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