Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 6.4e-199 697.2 349 100.0
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 8.6e-87 324.7 197 88.3
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.4e-73 280.0 197 74.6
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.4e-68 264.2 253 61.7
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 5.9e-43 179.1 188 59.6
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 8.8e-39 165.2 193 58.0
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 3.3e-30 136.7 194 52.6
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 4.4e-30 136.3 181 48.1
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 9.1e-28 128.6 193 49.7
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.6e-27 127.1 195 49.7
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 3.5e-27 126.7 180 49.4
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 4.5e-27 126.3 203 46.8
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 5.9e-27 125.9 180 49.4
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 7.7e-27 125.6 198 44.9
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.7e-26 124.4 194 48.5
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.7e-26 124.4 180 49.4
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.7e-26 124.4 190 48.9
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 2.9e-26 123.6 177 48.6
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 3.8e-26 123.2 187 44.9
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.1e-25 121.7 190 48.4
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 2.5e-25 120.6 183 47.5
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.2e-25 120.2 190 48.4
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 5.5e-25 119.4 192 42.7
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.2e-24 118.2 193 47.2
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.2e-24 118.2 192 47.4
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-24 118.2 190 47.4
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-24 118.2 189 47.6
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.6e-24 117.9 191 45.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.6e-24 117.9 208 43.8
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.1e-24 117.5 199 45.2
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.7e-24 117.1 187 44.4
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.7e-24 117.1 193 43.5
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 4.7e-24 116.3 194 45.4
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 6.1e-24 115.9 170 46.5
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 8.0e-24 115.5 180 43.9
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 8.0e-24 115.5 182 44.5
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.0e-23 115.2 201 41.8
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.8e-23 114.4 166 48.2
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 3.0e-23 113.6 199 42.7
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 4.0e-23 113.2 192 44.3
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 5.2e-23 112.8 197 43.1
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 6.7e-23 112.5 201 44.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.5e-22 111.3 186 44.1
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 7.5e-22 109.0 188 44.1
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 7.5e-22 109.0 186 44.6
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 9.7e-22 108.6 188 43.1
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 9.7e-22 108.6 184 43.5
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.7e-21 107.8 182 46.7
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.8e-21 107.1 192 40.1
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 3.7e-21 106.7 191 44.0
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 3.7e-21 106.7 189 43.9
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.7e-21 106.7 178 44.9
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 4.8e-21 106.3 192 42.7
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 6.3e-21 105.9 188 41.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.3e-21 105.9 186 44.6
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 6.3e-21 105.9 186 44.6
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.1e-20 105.1 187 43.3
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 1.1e-20 105.1 195 42.6
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.8e-20 104.4 177 44.1
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 1.8e-20 104.4 194 43.3
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.8e-20 104.4 204 40.2
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.4e-20 104.0 158 48.7
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 2.4e-20 104.0 202 39.6
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.1e-20 103.6 214 41.1
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 4.1e-20 103.2 228 40.8
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 4.1e-20 103.2 187 43.3
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 4.1e-20 103.2 173 43.4
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 4.1e-20 103.2 220 39.1
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 5.3e-20 102.8 188 40.4
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 5.3e-20 102.8 176 45.5
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 5.3e-20 102.8 215 40.5
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 7.0e-20 102.4 218 39.0
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 9.1e-20 102.1 209 42.1
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 9.1e-20 102.1 187 42.8
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 9.1e-20 102.1 213 39.9
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 2.0e-19 100.9 173 41.6
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 2.7e-19 100.5 218 41.7
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.5e-19 100.1 205 41.5
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 3.5e-19 100.1 160 43.8
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 5.9e-19 99.4 198 40.9
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 7.7e-19 99.0 218 41.3
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 7.7e-19 99.0 218 41.3
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.0e-18 98.6 78 71.8
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.0e-18 98.6 170 42.4
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.0e-18 98.6 170 42.4
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.3e-18 98.2 186 42.5
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.3e-18 98.2 170 41.8
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.8e-18 96.7 278 34.9
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 5.0e-18 96.3 210 38.6
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 6.5e-18 95.9 202 40.6
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 8.5e-18 95.5 184 40.2
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 8.5e-18 95.5 184 40.2
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.5e-17 94.7 194 40.7
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.9e-17 94.4 216 40.3
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 2.5e-17 94.0 195 39.0
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 2.5e-17 94.0 197 38.1
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 4.2e-17 93.2 169 40.2
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 4.2e-17 93.2 169 40.2
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 9.4e-17 92.0 160 44.4
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.6e-16 91.3 203 39.9
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.6e-16 91.3 183 38.8
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.6e-16 91.3 201 40.8
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-16 90.9 163 41.1
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-16 90.9 168 40.5
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 3.6e-16 90.1 211 37.4
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.6e-16 90.1 199 38.7
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 3.6e-16 90.1 185 38.9
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.7e-16 89.7 212 36.8
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 4.7e-16 89.7 189 36.5
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 4.7e-16 89.7 194 35.6
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 6.1e-16 89.4 198 38.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 6.1e-16 89.4 199 38.7
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 6.1e-16 89.4 189 40.7
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 6.1e-16 89.4 184 38.0
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.0e-15 88.6 208 35.6
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.4e-15 88.2 200 37.5
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 6.8e-15 85.9 203 39.4
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.2e-14 85.1 189 39.7
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.0e-14 84.3 122 41.8
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 3.4e-14 83.6 180 40.6
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 9.8e-14 82.0 212 38.2
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 9.8e-14 82.0 198 35.9
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.3e-13 81.6 194 36.1
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.3e-13 81.6 193 36.8
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 2.2e-13 80.9 183 37.2
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 2.8e-13 80.5 190 36.8
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 4.8e-13 79.7 199 37.7
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 8.3e-13 79.0 102 50.0
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 8.3e-13 79.0 125 44.8
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.1e-12 78.6 203 36.0
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.1e-12 78.6 106 48.1
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 1.4e-12 78.2 197 33.5
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 3.1e-12 77.0 170 37.1
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 3.1e-12 77.0 168 37.5
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 4.1e-12 76.6 204 34.3
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 4.1e-12 76.6 196 37.8
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 7.0e-12 75.9 70 52.9
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.6e-11 74.7 182 35.7
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.0e-11 74.3 173 35.8
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 4.5e-11 73.2 181 35.9
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 5.9e-11 72.8 186 34.4
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 7.7e-11 72.4 205 32.7
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 1.0e-10 72.0 150 41.3
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.0e-10 72.0 207 33.3
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.3e-10 71.6 196 33.7
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.7e-10 71.2 62 61.3
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.2e-08 65.1 61 59.0
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 3.0e-07 60.5 73 46.6
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 4.0e-07 60.1 60 58.3
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 1.2e-06 58.5 43 62.8
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 2.0e-06 57.8 189 31.2


User provided reference genes

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