Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.1e-299 1031.6 501 100.0
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.9e-67 260.4 361 39.6
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.0e-64 251.9 120 95.0
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.7e-64 251.1 123 95.1
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.2e-58 230.3 119 86.6
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.2e-58 230.3 119 84.0
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.6e-57 228.0 122 84.4
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.1e-57 227.6 121 84.3
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 6.0e-57 226.1 119 84.0
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.3e-56 224.9 119 82.4
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.7e-56 224.6 120 81.7
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.7e-56 224.6 121 81.8
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.3e-56 224.2 120 82.5
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 3.0e-56 223.8 120 80.8
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 5.1e-56 223.0 120 81.7
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 5.1e-56 223.0 120 83.3
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 6.6e-56 222.6 120 81.7
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.9e-55 221.1 119 82.4
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.9e-55 221.1 120 77.5
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.9e-55 221.1 120 79.2
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.5e-55 220.7 120 80.0
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.3e-55 220.3 120 81.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 4.3e-55 219.9 120 80.0
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 5.6e-55 219.5 120 81.7
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.6e-55 219.5 118 81.4
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 7.3e-55 219.2 120 80.8
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 9.6e-55 218.8 119 82.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 9.6e-55 218.8 120 80.0
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.3e-54 218.4 119 81.5
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.6e-54 218.0 120 79.2
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.6e-54 216.9 128 73.4
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.1e-53 215.3 120 77.5
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.8e-53 214.5 120 75.8
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 2.4e-53 214.2 120 76.7
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 2.4e-53 214.2 118 78.0
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 2.4e-53 214.2 120 78.3
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 3.1e-53 213.8 120 76.7
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 3.1e-53 213.8 120 77.5
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.1e-53 213.8 123 74.8
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 3.1e-53 213.8 127 74.0
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 4.0e-53 213.4 120 77.5
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 4.0e-53 213.4 120 74.2
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.0e-53 213.4 122 82.0
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 5.3e-53 213.0 121 76.0
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 6.9e-53 212.6 120 77.5
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 6.9e-53 212.6 120 78.3
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 9.0e-53 212.2 117 80.3
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.5e-52 211.5 120 78.3
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 2.0e-52 211.1 120 78.3
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.6e-52 210.7 120 75.0
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 2.6e-52 210.7 120 76.7
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.4e-52 210.3 120 74.2
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.5e-52 209.9 128 71.1
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 9.9e-52 208.8 120 75.0
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 9.9e-52 208.8 120 74.2
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.3e-51 208.4 120 75.0
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.3e-51 208.4 120 75.8
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.3e-51 208.4 120 75.0
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.7e-51 208.0 120 75.8
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.7e-51 208.0 122 72.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-51 208.0 120 74.2
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 2.2e-51 207.6 119 74.8
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 2.2e-51 207.6 119 73.9
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 2.9e-51 207.2 123 72.4
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.8e-51 206.8 120 75.0
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 6.4e-51 206.1 124 72.6
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.4e-51 206.1 120 72.5
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 6.4e-51 206.1 113 78.8
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 6.4e-51 206.1 120 75.0
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 8.4e-51 205.7 119 75.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.1e-50 205.3 120 73.3
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.1e-50 205.3 120 72.5
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.4e-50 204.9 125 71.2
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.4e-50 204.9 125 72.8
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.9e-50 204.5 113 78.8
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 3.2e-50 203.8 119 74.8
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 4.2e-50 203.4 120 74.2
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 5.4e-50 203.0 119 72.3
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 5.4e-50 203.0 120 72.5
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 5.4e-50 203.0 120 73.3
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 7.1e-50 202.6 117 76.1
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 7.1e-50 202.6 120 72.5
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.3e-50 202.2 120 72.5
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 9.3e-50 202.2 120 73.3
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.2e-49 201.8 125 71.2
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.2e-49 201.8 119 73.1
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.2e-49 201.8 118 73.7
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-49 201.4 120 71.7
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.7e-49 200.7 119 73.1
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.7e-49 200.7 119 73.1
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.5e-49 200.3 116 72.4
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 4.6e-49 199.9 116 76.7
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 6.0e-49 199.5 120 73.3
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-48 198.4 116 71.6
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 2.3e-48 197.6 119 71.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 3.9e-48 196.8 118 72.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 3.9e-48 196.8 120 70.8
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 6.7e-48 196.1 121 70.2
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-47 194.9 125 66.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.9e-47 194.5 122 69.7
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-47 194.1 116 70.7
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.5e-47 194.1 123 69.9
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 3.3e-47 193.7 119 68.9
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 3.3e-47 193.7 118 72.0
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 4.3e-47 193.4 118 72.0
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 6.2e-46 189.5 120 66.7
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 8.1e-46 189.1 120 70.8
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.1e-45 188.7 160 58.8
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.1e-45 188.7 120 70.0
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.1e-45 187.2 107 73.8
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 3.1e-45 187.2 114 71.9
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 4.0e-45 186.8 111 72.1
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 9.0e-45 185.7 121 66.1
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.5e-44 184.9 123 66.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.0e-44 184.5 121 65.3
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.6e-44 184.1 112 73.2
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.6e-44 184.1 107 74.8
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.0e-43 182.2 123 63.4
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.0e-43 182.2 119 66.4
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.7e-43 181.4 111 70.3
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.4e-43 179.1 107 72.0
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-42 178.7 111 68.5
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-42 178.3 125 65.6
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 4.2e-42 176.8 96 79.2
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.1e-41 174.5 120 65.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.6e-41 173.3 102 73.5
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-40 171.4 124 59.7
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 8.7e-40 169.1 107 71.0
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 3.3e-39 167.2 120 61.7
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.7e-38 163.7 122 57.4
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.4e-37 161.8 119 59.7
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 4.1e-37 160.2 97 71.1
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 9.0e-37 159.1 97 73.2
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.5e-36 158.3 91 74.7
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.9e-34 151.4 119 58.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.6e-33 148.3 110 62.7
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.5e-33 147.1 119 56.3
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 4.6e-33 146.7 100 64.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 6.1e-33 146.4 121 61.2
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.9e-33 146.0 109 61.5
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.0e-32 145.6 85 72.9
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.0e-32 144.1 112 63.4
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.9e-32 143.7 76 82.9
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.9e-26 124.8 130 43.8
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 5.5e-26 123.2 74 75.7
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.0e-24 119.0 76 68.4
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-20 105.5 63 71.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.5e-20 103.6 78 57.7
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-19 102.4 61 72.1
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 6.1e-17 93.2 80 55.0


User provided reference genes

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