Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0109500 Salix brachista HOM05D007545 ORTHO05D009579 4.5e-57 226.5 140 100.0
Potri.017G131400 Populus trichocarpa HOM05D007545 ORTHO05D009579 1.7e-48 198.0 140 90.7
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 6.7e-37 159.5 140 51.4
Manes.01G119900 Manihot esculenta HOM05D007545 ORTHO05D009579 2.8e-35 154.1 140 72.9
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 6.3e-35 152.9 140 50.7
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 1.5e-33 148.3 140 50.7
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 1.5e-33 148.3 140 49.3
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 1.3e-32 145.2 141 48.9
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 8.5e-32 142.5 140 47.1
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 8.5e-32 142.5 140 47.1
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 2.5e-31 141.0 140 46.4
Atru.chr1.1983 Acer truncatum HOM05D007545 ORTHO05D009579 1.8e-29 134.8 146 47.9
ClCG05G010640 Citrullus lanatus HOM05D007545 ORTHO05D009579 2.3e-29 134.4 140 45.0
PGR004G2599 Punica granatum HOM05D007545 ORTHO05D009579 3.0e-29 134.0 145 49.7
Cpa.g.sc340.2 Carica papaya HOM05D007545 ORTHO05D009579 3.9e-29 133.7 140 62.1
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 1.5e-28 131.7 141 45.4
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 4.4e-28 130.2 139 43.9
QL08p020033 Quercus lobata HOM05D007545 ORTHO05D009579 4.4e-28 130.2 137 64.2
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 7.4e-28 129.4 141 44.7
COL.COLO4_13423 Corchorus olitorius HOM05D007545 ORTHO05D009579 9.7e-28 129.0 87 58.6
QL05p016537 Quercus lobata HOM05D007545 ORTHO05D009579 1.3e-27 128.6 137 63.5
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 4.8e-27 126.7 140 53.6
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 6.3e-27 126.3 140 42.1
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 6.3e-27 126.3 140 45.7
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 6.3e-27 126.3 139 44.6
Rhsim10G0178600 Rhododendron simsii HOM05D007545 ORTHO05D009579 1.1e-26 125.6 140 55.7
Gohir.A08G039000 Gossypium hirsutum HOM05D007545 ORTHO05D009579 2.4e-26 124.4 140 45.0
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 3.1e-26 124.0 140 43.6
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 3.1e-26 124.0 139 42.4
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 5.3e-26 123.2 140 43.6
Haze_14281 Corylus avellana HOM05D007545 ORTHO05D009579 5.3e-26 123.2 127 48.0
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 5.3e-26 123.2 133 45.1
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 5.3e-26 123.2 140 42.1
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 5.3e-26 123.2 140 42.1
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 7.0e-26 122.9 143 42.7
Carub.0001s0902 Capsella rubella HOM05D007545 ORTHO05D009579 9.1e-26 122.5 140 42.9
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 9.1e-26 122.5 140 42.9
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 1.6e-25 121.7 143 42.7
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 2.6e-25 120.9 140 40.7
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 2.6e-25 120.9 140 42.1
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 2.6e-25 120.9 124 45.2
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 3.5e-25 120.6 140 42.9
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 3.5e-25 120.6 140 42.9
Nitab4.5_0001650g0140 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.5e-25 120.6 141 42.6
Nitab4.5_0001650g0170 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.5e-25 120.6 138 42.8
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 5.9e-25 119.8 140 43.6
Nitab4.5_0010123g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 5.9e-25 119.8 133 42.9
Nn3g18372 Nelumbo nucifera HOM05D007545 ORTHO05D009579 7.7e-25 119.4 94 53.2
AL1G20230 Arabidopsis lyrata HOM05D007545 ORTHO05D009579 1.3e-24 118.6 140 40.7
Lj4C259T9 Lonicera japonica HOM05D007545 ORTHO05D009579 2.9e-24 117.5 87 57.5
SGA_v2.0_scaffold45G17151 Striga asiatica HOM05D007545 ORTHO05D009579 2.9e-24 117.5 135 44.4
PGSC0003DMG400013237 Solanum tuberosum HOM05D007545 ORTHO05D009579 8.5e-24 115.9 92 53.3
CAN.G222.58 Capsicum annuum HOM05D007545 ORTHO05D009579 1.9e-23 114.8 142 40.1
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 1.9e-23 114.8 141 40.4
Peaxi162Scf00562g00002 Petunia axillaris HOM05D007545 ORTHO05D009579 1.9e-23 114.8 144 42.4
Solyc11g011410.3 Solanum lycopersicum HOM05D007545 ORTHO05D009579 1.9e-23 114.8 92 53.3
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 2.5e-23 114.4 125 48.0
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 3.2e-23 114.0 125 44.8
Nitab4.5_0001088g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.2e-23 114.0 92 51.1
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 7.2e-23 112.8 95 51.6
Sopen11g006210 Solanum pennellii HOM05D007545 ORTHO05D009579 1.6e-22 111.7 92 52.2
GSVIVG01030674001 Vitis vinifera HOM05D007545 ORTHO05D009579 2.1e-22 111.3 129 57.4
Hma1.2p1_0158F.1_g070060 Hydrangea macrophylla HOM05D007545 ORTHO05D009579 3.6e-22 110.5 137 59.1
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 3.6e-22 110.5 124 42.7
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 6.1e-22 109.8 145 39.3
Psat2g047200 Pisum sativum HOM05D007545 ORTHO05D009579 6.1e-22 109.8 144 45.1
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 1.4e-21 108.6 140 34.3
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 1.8e-21 108.2 145 40.7
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 1.8e-21 108.2 139 33.8
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 3.0e-21 107.5 146 39.7
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 6.7e-21 106.3 143 39.2
Ca_05835_v3 Cicer arietinum L. HOM05D007545 ORTHO05D009579 2.6e-20 104.4 95 48.4
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 2.6e-20 104.4 147 41.5
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 9.7e-20 102.4 134 36.6
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 1.7e-19 101.7 141 36.9
Phvul.008G237700 Phaseolus vulgaris HOM05D007545 ORTHO05D009579 1.7e-19 101.7 144 38.9
VMungo0647G0528 Vigna mungo HOM05D007545 ORTHO05D009579 3.7e-19 100.5 144 38.2
ATR0753G016 Amborella trichopoda HOM05D007545 ORTHO05D009579 5.3e-18 96.7 86 45.3
Aqoxy3G04069 Aquilegia oxysepala HOM05D007545 ORTHO05D009579 4.5e-17 93.6 119 52.9
Sed0020460 Sechium edule HOM05D007545 ORTHO05D009579 5.0e-16 90.1 140 36.4
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 1.1e-15 89.0 143 35.7
CANSAT64G1149 Cannabis sativa HOM05D007545 ORTHO05D009579 4.2e-15 87.0 133 37.6
ECA238G0700 Erigeron canadensis HOM05D007545 ORTHO05D009579 4.2e-15 87.0 144 33.3
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 9.4e-15 85.9 147 34.0
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.0e-13 82.4 91 40.7
HPP92_026949 Vanilla planifolia HOM05D007545 ORTHO05D009579 5.7e-12 76.6 91 36.3
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 9.8e-12 75.9 137 28.5
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 9.8e-12 75.9 91 37.4
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 1.7e-11 75.1 87 37.9
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 1.7e-11 75.1 87 36.8
Gorai.007G220500 Gossypium raimondii HOM05D007545 ORTHO05D009579 2.8e-11 74.3 140 33.6
Dinv28181 Davidia involucrata HOM05D007545 ORTHO05D009579 1.8e-10 71.6 48 64.6
Nitab4.5_0005124g0010 Nicotiana tabacum HOM05D007545 ORTHO05D009579 4.1e-10 70.5 48 60.4
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 9.1e-10 69.3 87 35.6
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.0e-09 68.2 136 28.7
Sopen04g025650 Solanum pennellii HOM05D007455 ORTHO05D009431 3.5e-09 67.4 81 37.0
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 7.7e-09 66.2 92 31.5
PGSC0003DMG400001336 Solanum tuberosum HOM05D007455 ORTHO05D009431 1.0e-08 65.9 81 35.8
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 1.3e-08 65.5 138 26.1
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 1.3e-08 65.5 93 31.2
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 1.7e-08 65.1 136 27.2
Sabra16G0170400 Salix brachista HOM05D007455 ORTHO05D009431 2.3e-08 64.7 92 31.5
Oeu039576.1 Olea europaea HOM05D007455 ORTHO05D009431 3.8e-08 63.9 91 30.8
TWI79G0736 Tripterygium wilfordii HOM05D007455 ORTHO05D009431 5.0e-08 63.5 133 26.3
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 5.0e-08 63.5 138 24.6
Cc10_g12620 Coffea canephora HOM05D007496 ORTHO05D009479 6.5e-08 63.2 82 34.1
ClCG03G012670 Citrullus lanatus HOM05D007455 ORTHO05D009431 8.6e-08 62.8 138 24.6
Sc16g0008150 Simmondsia chinensis HOM05D007390 ORTHO05D009114 8.6e-08 62.8 88 37.5
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 1.1e-07 62.4 133 26.3
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 1.5e-07 62.0 90 34.4
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 2.5e-07 61.2 89 30.3
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 2.5e-07 61.2 77 37.7
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 3.3e-07 60.8 92 29.3
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 4.2e-07 60.5 88 37.5
COL.COLO4_05199 Corchorus olitorius HOM05D007455 ORTHO05D009431 4.2e-07 60.5 89 29.2
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 4.2e-07 60.5 137 25.5
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 4.2e-07 60.5 89 30.3
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 5.5e-07 60.1 92 30.4
Sed0025332 Sechium edule HOM05D007455 ORTHO05D009431 7.2e-07 59.7 91 29.7
CDE07G1026 Ceratophyllum demersum HOM05D007545 ORTHO05D009579 9.5e-07 59.3 37 64.9
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 9.5e-07 59.3 92 28.3
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 9.5e-07 59.3 137 24.1
MSTRG.12443 Avicennia marina HOM05D007455 ORTHO05D009431 1.2e-06 58.9 89 30.3
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 1.2e-06 58.9 88 36.4
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.2e-06 58.9 92 29.3
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 1.2e-06 58.9 92 29.3
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.2e-06 58.9 92 29.3
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 1.6e-06 58.5 92 29.3
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 1.6e-06 58.5 88 35.2
Eucgr.C02447 Eucalyptus grandis HOM05D007455 ORTHO05D009431 2.1e-06 58.2 137 25.5
Oeu057168.1 Olea europaea HOM05D007063 ORTHO05D008822 2.1e-06 58.2 90 33.3
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 2.1e-06 58.2 92 33.7
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 2.1e-06 58.2 92 33.7
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 2.1e-06 58.2 92 33.7
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 2.8e-06 57.8 135 23.0
DCAR_002103 Daucus carota HOM05D007455 ORTHO05D009431 2.8e-06 57.8 89 29.2
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 2.8e-06 57.8 83 31.3
CsaV3_1G043280 Cucumis sativus L. HOM05D007455 ORTHO05D009431 3.6e-06 57.4 135 22.2
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 3.6e-06 57.4 88 36.4
Zm00001eb080520 Zea mays HOM05D007545 ORTHO05D009579 3.6e-06 57.4 140 26.4
Zm00001eb080530 Zea mays HOM05D007545 ORTHO05D009579 3.6e-06 57.4 140 26.4
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 4.7e-06 57.0 86 32.6
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.7e-06 57.0 92 31.5
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 6.1e-06 56.6 93 30.1
AUR62036473 Chenopodium quinoa HOM05D007390 ORTHO05D009114 6.1e-06 56.6 91 33.0
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 6.1e-06 56.6 88 29.5
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 6.1e-06 56.6 91 27.5
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 8.0e-06 56.2 98 28.6


User provided reference genes

Program Settings