Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 4.5e-248 860.9 470 100.0
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 3.4e-219 765.0 470 91.1
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 6.7e-175 617.8 470 76.2
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 4.6e-168 595.1 470 74.9
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 6.0e-160 568.2 464 72.8
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 1.5e-158 563.5 468 70.1
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 4.5e-155 552.0 472 70.3
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 8.5e-154 547.7 476 68.5
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 4.2e-153 545.4 472 70.6
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 4.2e-153 545.4 464 70.9
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 5.5e-153 545.0 470 70.0
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 7.9e-152 541.2 468 68.4
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 3.9e-151 538.9 462 70.6
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 3.3e-150 535.8 469 69.7
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.8e-149 532.7 466 69.1
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.4e-148 530.4 467 68.3
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.8e-148 530.0 468 67.3
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.4e-145 520.4 470 66.8
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 6.1e-144 515.0 469 67.8
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 1.8e-140 503.4 467 66.6
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.8e-140 503.4 469 65.9
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.5e-139 500.4 464 67.0
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.0e-138 497.7 469 64.8
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.0e-138 497.7 469 64.6
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.0e-138 497.7 469 64.8
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.3e-138 497.3 464 66.8
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 2.9e-138 496.1 470 65.7
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.9e-138 496.1 469 64.6
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.5e-138 495.0 402 72.6
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.1e-137 494.2 464 66.6
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.1e-137 494.2 468 65.8
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 3.2e-137 492.7 466 65.7
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 2.0e-134 483.4 470 64.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 8.2e-133 478.0 504 58.7
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 1.4e-132 477.2 465 62.4
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.6e-131 473.8 506 59.5
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 4.5e-131 472.2 420 67.9
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 7.2e-129 464.9 475 62.3
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.2e-128 464.2 443 65.2
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.2e-128 464.2 444 65.8
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.6e-128 463.8 468 62.4
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 8.0e-128 461.5 458 62.2
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.4e-127 460.7 468 60.9
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 3.0e-127 459.5 471 60.9
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 5.2e-127 458.8 346 76.9
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 5.2e-127 458.8 467 64.7
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.5e-126 457.2 468 61.3
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 4.4e-126 455.7 443 65.0
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 4.4e-126 455.7 444 64.9
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 9.7e-126 454.5 458 61.4
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 9.7e-126 454.5 444 65.1
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 4.8e-125 452.2 444 63.1
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 6.3e-125 451.8 444 64.6
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 8.3e-125 451.4 441 63.0
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 8.3e-125 451.4 457 62.8
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 2.4e-124 449.9 468 60.0
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 2.4e-124 449.9 465 60.0
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 4.1e-124 449.1 450 63.3
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.6e-123 447.2 430 65.1
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 5.9e-123 445.3 456 61.4
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.0e-122 444.5 468 62.0
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.3e-122 444.1 470 62.8
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 5.0e-122 442.2 442 61.3
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 6.5e-122 441.8 461 63.8
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 8.5e-122 441.4 406 69.5
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 5.5e-121 438.7 467 61.7
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.2e-120 437.6 434 64.3
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 2.7e-120 436.4 418 67.7
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 3.6e-120 436.0 416 66.8
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 8.0e-120 434.9 462 57.6
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.8e-119 433.7 415 68.4
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 8.8e-119 431.4 448 61.4
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 3.7e-117 426.0 395 69.1
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 4.8e-117 425.6 455 64.0
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.1e-116 424.5 412 63.6
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-116 424.5 457 63.2
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.4e-116 424.1 384 66.1
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 1.6e-115 420.6 456 63.6
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 2.7e-115 419.9 458 63.1
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 2.7e-115 419.9 458 63.1
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.9e-115 418.7 410 67.3
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 7.7e-115 418.3 413 65.4
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 4.2e-113 412.5 399 66.7
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 2.1e-112 410.2 466 60.9
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 2.1e-112 410.2 466 60.9
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 6.8e-111 405.2 386 68.9
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.6e-110 403.3 439 59.9
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 3.4e-110 402.9 442 62.0
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.4e-108 397.5 300 69.7
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 1.6e-107 394.0 392 63.8
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 4.5e-107 392.5 259 78.4
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 7.8e-107 391.7 412 61.2
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.7e-106 390.6 378 63.5
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 8.6e-106 388.3 338 67.8
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 5.6e-105 385.6 396 60.6
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 2.3e-103 380.2 469 54.8
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.2e-102 377.9 329 70.8
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 1.6e-99 367.5 392 59.7
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.2e-96 357.8 459 54.9
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.8e-96 356.7 439 56.0
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 8.9e-95 351.7 447 55.7
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.7e-93 346.3 340 67.6
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.4e-92 344.4 247 72.1
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 7.6e-78 295.4 200 78.0
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 7.3e-73 278.9 285 66.3
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 2.6e-70 270.4 228 66.2
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 3.4e-70 270.0 464 40.5
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 6.4e-69 265.8 363 52.1
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 3.6e-64 250.0 335 52.8
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 5.6e-57 226.1 356 45.2
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 5.6e-57 226.1 247 64.8
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 7.6e-54 215.7 247 46.2
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.0e-53 215.3 238 49.2
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.0e-53 215.3 370 44.3
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 9.3e-52 208.8 135 81.5
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 7.9e-51 205.7 242 48.8
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.1e-39 168.7 248 41.1
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 3.1e-39 167.2 123 69.9
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.9e-36 157.9 211 43.6
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.2e-30 138.7 77 92.2
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.3e-24 116.3 169 52.1
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.8e-18 98.2 60 81.7
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 5.9e-14 83.2 176 33.0
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 2.5e-12 77.8 166 36.7
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.2e-10 70.1 112 40.2


User provided reference genes

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