Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 5.7e-217 757.3 382 100.0
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 1.6e-57 227.6 143 82.5
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 1.4e-50 204.5 138 77.5
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 1.4e-29 134.8 137 53.3
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 1.4e-29 134.8 144 55.6
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 2.2e-27 127.5 130 57.7
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 2.9e-27 127.1 159 50.3
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 4.9e-27 126.3 145 50.3
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 2.5e-23 114.0 116 55.2
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 4.3e-23 113.2 112 53.6
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 1.6e-22 111.3 135 46.7
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 2.1e-22 110.9 141 43.3
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 2.8e-22 110.5 147 40.8
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 4.8e-22 109.8 146 41.1
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 6.3e-22 109.4 151 43.0
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 6.3e-22 109.4 140 45.0
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 6.3e-22 109.4 133 45.9
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 1.8e-21 107.8 125 49.6
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 1.8e-21 107.8 135 47.4
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 1.5e-20 104.8 138 44.9
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 3.4e-20 103.6 156 41.0
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 5.9e-20 102.8 81 59.3
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 7.6e-20 102.4 145 44.1
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 2.2e-19 100.9 136 44.1
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 3.8e-19 100.1 141 39.7
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 6.5e-19 99.4 151 41.1
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 1.4e-18 98.2 96 53.1
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 1.4e-18 98.2 146 39.7
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 1.9e-18 97.8 155 38.7
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 2.5e-18 97.4 155 38.7
Medtr5g079600 Medicago truncatula HOM05D008294 ORTHO05D010468 4.2e-18 96.7 124 40.3
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 9.3e-18 95.5 143 41.3
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 1.2e-17 95.1 126 47.6
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 1.2e-17 95.1 134 41.8
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 1.2e-17 95.1 147 41.5
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 2.7e-17 94.0 110 50.0
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 3.5e-17 93.6 102 45.1
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 1.3e-16 91.7 95 47.4
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 3.0e-16 90.5 114 45.6
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 3.3e-15 87.0 137 37.2
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 1.3e-14 85.1 159 39.6
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 3.7e-14 83.6 138 39.9
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 6.3e-14 82.8 114 44.7
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.2e-12 78.6 155 38.7
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 1.5e-12 78.2 131 38.2
TPR.G3487 Trifolium pratense HOM05D008294 ORTHO05D010468 2.6e-12 77.4 123 37.4
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 3.4e-12 77.0 111 40.5
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.0e-11 75.5 108 38.9
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.0e-11 75.5 112 42.9
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.3e-11 75.1 78 46.2
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 2.2e-11 74.3 108 38.9
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 6.5e-11 72.8 110 38.2
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 4.2e-10 70.1 95 38.9
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 5.5e-10 69.7 119 39.5
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 5.5e-10 69.7 95 37.9
SEGI_10730 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 6.7e-08 62.8 119 35.3
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 2.0e-07 61.2 46 54.3
Psat2g041240 Pisum sativum HOM05D008294 ORTHO05D010468 2.0e-07 61.2 129 32.6
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 2.5e-07 60.8 45 55.6
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 4.3e-07 60.1 118 33.1
Aqoxy3G03897 Aquilegia oxysepala HOM05D002803 ORTHO05D003089 5.7e-07 59.7 75 41.3
Cpa.g.sc48.126 Carica papaya HOM05D010455 ORTHO05D010927 5.7e-07 59.7 94 37.2
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 7.4e-07 59.3 77 39.0
Sed0002511 Sechium edule HOM05D002803 ORTHO05D003089 7.4e-07 59.3 44 54.5
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 9.7e-07 58.9 41 51.2
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.3e-06 58.5 128 30.5
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 1.3e-06 58.5 74 37.8
Cfa019832 Carpinus fangiana HOM05D002803 ORTHO05D003089 1.7e-06 58.2 124 29.0
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 1.7e-06 58.2 68 41.2
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 1.7e-06 58.2 76 38.2
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 1.7e-06 58.2 134 32.1
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 2.2e-06 57.8 83 37.3
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 2.2e-06 57.8 83 37.3
Pp3c4_18190 Physcomitrium patens HOM05D035914 ORTHO05D010468 2.2e-06 57.8 139 29.5
Duzib084G1194 Durio zibethinus HOM05D002803 ORTHO05D003089 2.8e-06 57.4 114 32.5
Pp3c20_15420 Physcomitrium patens HOM05D035914 ORTHO05D050329 2.8e-06 57.4 154 32.5
HanXRQChr12g0374281 Helianthus annuus HOM05D002803 ORTHO05D003089 3.7e-06 57.0 112 31.2
Nitab4.5_0007105g0020 Nicotiana tabacum HOM05D002803 ORTHO05D003089 3.7e-06 57.0 99 35.4
Psat1g024640 Pisum sativum HOM05D002803 ORTHO05D003089 3.7e-06 57.0 81 34.6
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 4.8e-06 56.6 83 36.1
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 4.8e-06 56.6 95 33.7
TWI60G0312 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 4.8e-06 56.6 110 34.5
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 4.8e-06 56.6 99 30.3
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 6.3e-06 56.2 72 38.9
Lalb_Chr07g0178561 Lupinus albus HOM05D002803 ORTHO05D003089 6.3e-06 56.2 68 39.7
MBI16_g46922_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 6.3e-06 56.2 115 28.7
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 8.2e-06 55.8 136 33.8
CiPaw.03G068500 Carya illinoinensis HOM05D008294 ORTHO05D010468 8.2e-06 55.8 118 33.9
Haze_18600 Corylus avellana HOM05D002803 ORTHO05D003089 8.2e-06 55.8 123 27.6
MBI16_g33826_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 8.2e-06 55.8 115 28.7
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 8.2e-06 55.8 44 47.7


User provided reference genes

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