Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0097600 Salix brachista HOM05D000260 ORTHO05D000318 9.3e-46 186.4 88 100.0
Sabra17G0097800 Salix brachista HOM05D000260 ORTHO05D000318 9.0e-41 169.9 91 89.0
Sabra17G0097500 Salix brachista HOM05D000260 ORTHO05D000318 2.3e-28 128.6 66 86.4
Potri.017G118250 Populus trichocarpa HOM05D000260 ORTHO05D000318 3.4e-24 114.8 66 77.3
Potri.017G117400 Populus trichocarpa HOM05D000260 ORTHO05D000318 3.3e-19 98.2 65 66.2
Potri.004G096675 Populus trichocarpa HOM05D000260 ORTHO05D000318 2.8e-18 95.1 68 63.2
Potri.004G096900 Populus trichocarpa HOM05D000260 ORTHO05D000318 3.7e-18 94.7 68 61.8
Sabra04G0065500 Salix brachista HOM05D000260 ORTHO05D000318 1.5e-16 89.4 66 60.6
Sabra17G0097300 Salix brachista HOM05D000260 ORTHO05D000318 1.9e-14 82.4 66 53.0
Potri.017G117340 Populus trichocarpa HOM05D000072 ORTHO05D000026 7.9e-13 77.0 65 49.2
Manes.01G112000 Manihot esculenta HOM05D000072 ORTHO05D000026 5.7e-11 70.9 79 41.8
RcHm_v2.0_Chr6g0273031 Rosa chinensis HOM05D000260 ORTHO05D000318 9.7e-11 70.1 63 44.4
TAR371G0639 Trochodendron aralioides HOM05D000072 ORTHO05D000026 1.7e-10 69.3 67 46.3
Potri.017G116900 Populus trichocarpa HOM05D000072 ORTHO05D000026 2.2e-10 68.9 77 41.6
Nn4g23934 Nelumbo nucifera HOM05D000260 ORTHO05D000318 3.7e-10 68.2 45 55.6
SGA_v2.0_scaffold202G41465 Striga asiatica HOM05D000260 ORTHO05D000318 3.7e-10 68.2 88 38.6
Sabra17G0096800 Salix brachista HOM05D000464 ORTHO05D000408 1.4e-09 66.2 81 40.7
RcHm_v2.0_Chr6g0264401 Rosa chinensis HOM05D000260 ORTHO05D000318 1.8e-09 65.9 64 45.3
MSTRG.15307 Avicennia marina HOM05D000260 ORTHO05D000318 2.4e-09 65.5 63 47.6
Dinv34805 Davidia involucrata HOM05D000260 ORTHO05D000318 2.4e-09 65.5 66 45.5
TAR371G0287 Trochodendron aralioides HOM05D000072 ORTHO05D000026 2.4e-09 65.5 63 46.0
TWI77G0678 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 3.1e-09 65.1 67 44.8
Nn4g23918 Nelumbo nucifera HOM05D000072 ORTHO05D000026 4.1e-09 64.7 56 48.2
Prupe.3G145800 Prunus persica HOM05D000072 ORTHO05D000026 4.1e-09 64.7 61 44.3
SGA_v2.0_scaffold49G18115 Striga asiatica HOM05D000260 ORTHO05D000318 4.1e-09 64.7 82 36.6
Haze_14164 Corylus avellana HOM05D000260 ORTHO05D000318 6.9e-09 63.9 68 41.2
Dinv28134 Davidia involucrata HOM05D000260 ORTHO05D004405 6.9e-09 63.9 46 54.3
Dinv34804 Davidia involucrata HOM05D000260 ORTHO05D000318 1.2e-08 63.2 45 53.3
Duzib138G1150 Durio zibethinus HOM05D000072 ORTHO05D000026 1.2e-08 63.2 85 37.6
FAN15G2298 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.5e-08 62.8 52 46.2
Gorai.007G182700 Gossypium raimondii HOM05D000072 ORTHO05D000026 1.5e-08 62.8 80 40.0
Gorai.007G183700 Gossypium raimondii HOM05D000260 ORTHO05D000318 1.5e-08 62.8 80 40.0
Prupe.3G146600 Prunus persica HOM05D000260 ORTHO05D000318 1.5e-08 62.8 79 36.7
Aqoxy3G00225 Aquilegia oxysepala HOM05D000260 ORTHO05D000318 2.6e-08 62.0 46 52.2
Dinv34807 Davidia involucrata HOM05D000072 ORTHO05D000026 2.6e-08 62.0 45 51.1
CSS0025089 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 3.4e-08 61.6 73 43.8
CiPaw.03G063700 Carya illinoinensis HOM05D000260 ORTHO05D000318 3.4e-08 61.6 58 43.1
AUR62013137 Chenopodium quinoa HOM05D000260 ORTHO05D000318 3.4e-08 61.6 66 40.9
MD17G1247800 Malus domestica HOM05D000260 ORTHO05D000318 3.4e-08 61.6 48 52.1
Dinv34800 Davidia involucrata HOM05D000260 ORTHO05D000318 4.5e-08 61.2 66 43.9
Duzib138G0784 Durio zibethinus HOM05D000072 ORTHO05D000026 4.5e-08 61.2 65 41.5
MD09G1255100 Malus domestica HOM05D000260 ORTHO05D000318 4.5e-08 61.2 48 50.0
Manes.01G112301 Manihot esculenta HOM05D000260 ORTHO05D000318 4.5e-08 61.2 60 43.3
Manes.02G070200 Manihot esculenta HOM05D000072 ORTHO05D000026 4.5e-08 61.2 79 36.7
Gohir.A11G165550 Gossypium hirsutum HOM05D000260 ORTHO05D000318 5.9e-08 60.8 80 40.0
Gohir.D11G170700 Gossypium hirsutum HOM05D000072 ORTHO05D000026 7.7e-08 60.5 72 41.7
Oeu036849.1 Olea europaea HOM05D000260 ORTHO05D000318 7.7e-08 60.5 53 45.3
QL10p047718 Quercus lobata HOM05D000072 ORTHO05D000026 7.7e-08 60.5 46 50.0
Sopen02g030970 Solanum pennellii HOM05D000260 ORTHO05D000318 7.7e-08 60.5 64 45.3
vmacro05530 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 7.7e-08 60.5 66 42.4
AUR62000591 Chenopodium quinoa HOM05D000072 ORTHO05D000026 1.0e-07 60.1 75 33.3
Solyc02g086290.2 Solanum lycopersicum HOM05D000260 ORTHO05D000318 1.0e-07 60.1 64 45.3
Aqoxy3G00214 Aquilegia oxysepala HOM05D000260 ORTHO05D000318 1.3e-07 59.7 60 46.7
Aqoxy3G00224 Aquilegia oxysepala HOM05D000072 ORTHO05D000026 1.3e-07 59.7 60 46.7
Migut.H00234 Erythranthe guttata HOM05D000260 ORTHO05D000318 1.7e-07 59.3 63 42.9
Gohir.D11G171500 Gossypium hirsutum HOM05D000260 ORTHO05D000318 1.7e-07 59.3 80 38.8
Lj9C528T10 Lonicera japonica HOM05D000072 ORTHO05D000026 1.7e-07 59.3 66 43.9
QL10p047709 Quercus lobata HOM05D000260 ORTHO05D000318 1.7e-07 59.3 46 47.8
PGSC0003DMG402005729 Solanum tuberosum HOM05D000260 ORTHO05D000318 1.7e-07 59.3 66 39.4
COL.COLO4_09361 Corchorus olitorius HOM05D000260 ORTHO05D000318 2.2e-07 58.9 67 38.8
Duzib205G0612 Durio zibethinus HOM05D000260 ORTHO05D000318 2.2e-07 58.9 86 39.5
Peaxi162Scf00394g00915 Petunia axillaris HOM05D000260 ORTHO05D000318 2.2e-07 58.9 48 50.0
Prupe.3G145600 Prunus persica HOM05D000072 ORTHO05D000026 2.2e-07 58.9 57 43.9
QL02p050590 Quercus lobata HOM05D000260 ORTHO05D000318 2.2e-07 58.9 66 37.9
Rhsim10G0069700 Rhododendron simsii HOM05D000260 ORTHO05D000318 2.9e-07 58.5 91 38.5
MSTRG.3542 Avicennia marina HOM05D000260 ORTHO05D000318 3.8e-07 58.2 65 35.4
Eucgr.F02517 Eucalyptus grandis HOM05D000260 ORTHO05D000318 3.8e-07 58.2 67 38.8
Eucgr.L03194 Eucalyptus grandis HOM05D000260 ORTHO05D000318 3.8e-07 58.2 67 38.8
Solyc03g119240.3 Solanum lycopersicum HOM05D000260 ORTHO05D000318 3.8e-07 58.2 66 37.9
FAN05G2194 Fragaria x ananassa HOM05D000260 ORTHO05D000318 5.0e-07 57.8 60 40.0
FAN09G3772 Fragaria x ananassa HOM05D001455 ORTHO05D001587 5.0e-07 57.8 60 40.0
Actinidia17645 Actinidia chinensis HOM05D000260 ORTHO05D000318 6.5e-07 57.4 80 33.8
Cc07_g08600 Coffea canephora HOM05D000260 ORTHO05D000318 6.5e-07 57.4 50 48.0
DCAR_025904 Daucus carota HOM05D002670 ORTHO05D003079 6.5e-07 57.4 50 46.0
Duzib213G0625 Durio zibethinus HOM05D000072 ORTHO05D000026 6.5e-07 57.4 61 42.6
Lj2C440G3 Lonicera japonica HOM05D000072 ORTHO05D000318 6.5e-07 57.4 58 41.4
Lj9A528T40 Lonicera japonica HOM05D000260 ORTHO05D000318 6.5e-07 57.4 58 41.4
Peaxi162Scf00683g00037 Petunia axillaris HOM05D000072 ORTHO05D000318 6.5e-07 57.4 62 35.5
QL12p016308 Quercus lobata HOM05D000072 ORTHO05D000026 8.5e-07 57.0 64 37.5
Rhsim08G0083500 Rhododendron simsii HOM05D000260 ORTHO05D000318 8.5e-07 57.0 83 34.9
PGSC0003DMG400005730 Solanum tuberosum HOM05D000072 ORTHO05D000026 8.5e-07 57.0 62 35.5
Dinv33960 Davidia involucrata HOM05D000260 ORTHO05D000318 1.1e-06 56.6 63 34.9
PGSC0003DMG400026384 Solanum tuberosum HOM05D000260 ORTHO05D000318 1.1e-06 56.6 45 48.9
TAR627G0775 Trochodendron aralioides HOM05D000260 ORTHO05D000318 1.4e-06 56.2 44 45.5
EL10Ac2g04544 Beta vulgaris HOM05D000260 ORTHO05D000318 1.9e-06 55.8 66 37.9
EL10Ac9g21486 Beta vulgaris HOM05D000260 ORTHO05D000318 1.9e-06 55.8 45 48.9
AUR62009029 Chenopodium quinoa HOM05D000072 ORTHO05D000026 1.9e-06 55.8 46 50.0
AUR62010142 Chenopodium quinoa HOM05D000260 ORTHO05D000318 1.9e-06 55.8 48 45.8
Lj5C154G20 Lonicera japonica HOM05D000072 ORTHO05D000026 1.9e-06 55.8 66 36.4
Solyc02g086270.4 Solanum lycopersicum HOM05D000260 ORTHO05D000318 1.9e-06 55.8 45 48.9
Cc04_g11920 Coffea canephora HOM05D000072 ORTHO05D000026 2.5e-06 55.5 50 46.0
COL.COLO4_09357 Corchorus olitorius HOM05D000464 ORTHO05D000408 2.5e-06 55.5 52 50.0
Eucgr.F02102 Eucalyptus grandis HOM05D000260 ORTHO05D000318 2.5e-06 55.5 48 39.6
FAN14G5280 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.5e-06 55.5 46 45.7
Lj9C528T6 Lonicera japonica HOM05D000072 ORTHO05D000026 2.5e-06 55.5 64 40.6
AUR62023275 Chenopodium quinoa HOM05D000072 ORTHO05D000026 3.2e-06 55.1 81 34.6
MELO3C010403.2 Cucumis melo HOM05D000260 ORTHO05D000318 3.2e-06 55.1 43 51.2
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 3.2e-06 55.1 69 36.2
Eucgr.F02509 Eucalyptus grandis HOM05D000072 ORTHO05D000026 3.2e-06 55.1 68 36.8
Rhsim08G0091700 Rhododendron simsii HOM05D000072 ORTHO05D000026 3.2e-06 55.1 66 37.9
Sopen02g030950 Solanum pennellii HOM05D000260 ORTHO05D000318 3.2e-06 55.1 45 46.7
Sopen02g030960 Solanum pennellii HOM05D000260 ORTHO05D000318 3.2e-06 55.1 47 44.7
TAR433G0004 Trochodendron aralioides HOM05D000260 ORTHO05D000318 3.2e-06 55.1 48 47.9
CAN.G1129.5 Capsicum annuum HOM05D000260 ORTHO05D000318 4.2e-06 54.7 66 37.9
Eucgr.B00756 Eucalyptus grandis HOM05D000260 ORTHO05D000318 4.2e-06 54.7 43 51.2
MD09G1255300 Malus domestica HOM05D000260 ORTHO05D000318 4.2e-06 54.7 49 42.9
Nitab4.5_0003652g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 4.2e-06 54.7 47 44.7
Ah.01g022300 Amaranthus hybridus HOM05D000260 ORTHO05D000318 5.5e-06 54.3 82 26.8
Cpa.g.sc170.40 Carica papaya HOM05D000260 ORTHO05D000318 5.5e-06 54.3 64 35.9
ClCG11G007790 Citrullus lanatus HOM05D000260 ORTHO05D000318 5.5e-06 54.3 78 30.8
Dinv33963 Davidia involucrata HOM05D000889 ORTHO05D000693 5.5e-06 54.3 64 40.6
Eucgr.B00812 Eucalyptus grandis HOM05D000072 ORTHO05D000026 5.5e-06 54.3 61 39.3
Eucgr.B00820 Eucalyptus grandis HOM05D000072 ORTHO05D000026 5.5e-06 54.3 61 39.3
Eucgr.L01204 Eucalyptus grandis HOM05D000072 ORTHO05D000026 5.5e-06 54.3 58 36.2
Gorai.008G056600 Gossypium raimondii HOM05D000260 ORTHO05D000318 5.5e-06 54.3 62 40.3
Hund16173 Selenicereus undatus HOM05D000260 ORTHO05D000318 5.5e-06 54.3 67 37.3
vmacro18066 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 5.5e-06 54.3 64 39.1
Cpa.g.sc3.473 Carica papaya HOM05D000260 ORTHO05D000318 7.2e-06 53.9 68 39.7
Migut.L00494 Erythranthe guttata HOM05D000260 ORTHO05D000318 7.2e-06 53.9 41 53.7
Gohir.D12G053400 Gossypium hirsutum HOM05D000260 ORTHO05D000318 7.2e-06 53.9 61 41.0
SalBow5G4438 Salvia bowleyana HOM05D000260 ORTHO05D000318 7.2e-06 53.9 78 37.2
Thecc.04G130400 Theobroma cacao HOM05D000072 ORTHO05D000026 7.2e-06 53.9 66 39.4
Ah.04g162210 Amaranthus hybridus HOM05D000260 ORTHO05D000318 9.4e-06 53.5 54 42.6
Ciclev10024533m.g Citrus clementina HOM05D000260 ORTHO05D000318 9.4e-06 53.5 59 37.3
Cc07_g08660 Coffea canephora HOM05D000072 ORTHO05D000026 9.4e-06 53.5 49 46.9
Eucgr.F02806 Eucalyptus grandis HOM05D000072 ORTHO05D000026 9.4e-06 53.5 39 46.2
Gohir.A12G054600 Gossypium hirsutum HOM05D000260 ORTHO05D000318 9.4e-06 53.5 62 40.3
Lj5C152G14 Lonicera japonica HOM05D000260 ORTHO05D000318 9.4e-06 53.5 70 40.0
Sed0018509 Sechium edule HOM05D000260 ORTHO05D000318 9.4e-06 53.5 87 37.9
Hund16178 Selenicereus undatus HOM05D000072 ORTHO05D000026 9.4e-06 53.5 47 48.9
PGSC0003DMG400026383 Solanum tuberosum HOM05D000260 ORTHO05D000318 9.4e-06 53.5 50 44.0


User provided reference genes

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