Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 2.3e-233 812.0 445 100.0
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.3e-100 370.9 242 94.6
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 9.0e-81 305.1 240 71.2
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 2.2e-66 257.3 231 65.8
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 5.9e-64 249.2 248 60.9
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 5.9e-64 249.2 248 60.9
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 7.7e-64 248.8 265 59.2
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 7.7e-64 248.8 247 63.2
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.9e-63 246.9 260 59.6
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.1e-62 245.0 252 59.1
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 2.1e-61 240.7 250 62.8
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 4.7e-61 239.6 252 58.7
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 3.9e-60 236.5 248 61.7
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 2.6e-59 233.8 250 60.8
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 4.4e-59 233.0 251 60.2
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.8e-58 230.3 247 61.1
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 6.3e-58 229.2 248 59.7
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.8e-57 227.6 248 59.7
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.6e-56 223.8 257 57.6
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.5e-56 223.0 232 60.8
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.0e-55 221.9 248 58.1
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 6.1e-53 212.6 339 46.9
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.8e-52 208.8 249 56.2
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 9.8e-51 205.3 266 54.9
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 8.3e-50 202.2 248 54.8
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 1.4e-49 201.4 253 54.2
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.7e-48 197.2 229 57.2
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 2.2e-47 194.1 252 50.8
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 2.9e-47 193.7 230 56.1
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.5e-47 192.2 249 52.6
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 3.6e-45 186.8 363 39.4
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 4.0e-44 183.3 249 53.4
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.0e-43 181.0 151 66.9
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.2e-42 177.6 206 55.3
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.3e-42 175.6 206 54.4
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 7.0e-41 172.6 264 48.9
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.0e-41 172.6 260 46.9
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 1.2e-40 171.8 229 50.2
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.2e-40 171.8 248 47.6
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 2.0e-40 171.0 230 50.4
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 2.3e-39 167.5 263 46.8
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.9e-39 167.2 206 52.9
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.9e-39 167.2 249 46.6
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 4.2e-38 163.3 261 46.4
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 7.2e-38 162.5 257 47.1
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 2.8e-37 160.6 207 49.8
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 2.8e-37 160.6 230 47.8
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.0e-36 158.7 251 46.2
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.0e-36 158.7 244 47.1
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 2.3e-36 157.5 247 46.2
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 6.8e-36 156.0 244 51.6
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 8.9e-36 155.6 206 51.0
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.5e-35 154.8 251 46.2
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 2.0e-35 154.5 243 44.4
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.4e-35 153.7 225 48.0
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 4.4e-35 153.3 247 45.7
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.5e-35 152.5 225 48.0
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.8e-33 147.9 230 46.1
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.8e-33 147.9 209 49.3
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 4.1e-33 146.7 257 42.8
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.6e-32 144.8 263 43.3
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.5e-32 143.7 249 46.6
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.5e-32 143.7 252 46.4
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 5.9e-32 142.9 234 44.9
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 2.3e-31 141.0 256 42.6
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.9e-31 140.2 246 43.5
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 8.6e-31 139.0 234 43.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 8.6e-31 139.0 219 47.0
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 1.5e-30 138.3 216 49.5
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.9e-30 137.9 256 45.7
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.9e-30 137.9 256 45.7
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 3.3e-30 137.1 258 47.3
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 3.3e-30 137.1 251 43.4
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 4.3e-30 136.7 249 44.2
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 5.6e-30 136.3 235 44.3
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 5.6e-30 136.3 196 47.4
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 1.6e-29 134.8 202 50.0
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.1e-29 134.4 240 44.2
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.8e-29 134.0 232 44.8
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.6e-29 133.7 279 38.7
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 3.1e-28 130.6 206 46.6
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.1e-28 130.6 239 46.0
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 5.2e-28 129.8 270 41.1
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 5.2e-28 129.8 270 41.1
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.2e-27 128.6 245 41.2
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.6e-27 127.5 206 48.1
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.4e-27 127.1 252 46.0
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 4.4e-27 126.7 270 40.4
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 4.4e-27 126.7 210 46.7
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 5.8e-27 126.3 244 41.0
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.8e-27 126.3 182 50.5
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 9.8e-27 125.6 240 41.7
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.2e-26 124.4 259 47.1
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.2e-26 124.4 238 42.0
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 2.9e-26 124.0 274 39.4
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 3.7e-26 123.6 220 45.9
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.4e-25 120.9 242 49.2
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 2.4e-25 120.9 196 43.9
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 5.4e-25 119.8 258 48.1
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 3.5e-24 117.1 289 39.4
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 7.8e-24 115.9 245 40.8
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.3e-23 114.4 245 39.2
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 6.6e-23 112.8 247 42.1
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 6.6e-23 112.8 232 41.4
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 8.6e-23 112.5 219 42.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.1e-22 112.1 252 41.3
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 9.5e-22 109.0 257 44.7
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 9.5e-22 109.0 260 37.7
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.8e-21 107.5 194 42.8
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 6.2e-21 106.3 197 42.1
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.1e-21 105.9 99 63.6
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 3.1e-20 104.0 126 51.6
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.2e-19 102.1 252 37.3
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 2.6e-19 100.9 270 36.3
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 3.4e-19 100.5 267 36.7
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 5.8e-19 99.8 258 38.4
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 9.8e-19 99.0 295 39.0
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 9.8e-19 99.0 195 40.5
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.7e-18 98.2 249 35.7
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.7e-18 98.2 213 41.8
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 2.2e-18 97.8 256 39.8
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.9e-18 97.4 254 48.4
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 2.9e-18 97.4 254 37.4
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 3.7e-18 97.1 330 35.8
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 8.3e-18 95.9 223 38.6
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 1.4e-17 95.1 123 52.0
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.4e-17 95.1 214 39.3
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.9e-17 94.7 295 38.6
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 9.2e-17 92.4 254 39.0
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.2e-16 92.0 127 52.8
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.6e-16 91.7 244 36.5
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 3.5e-16 90.5 191 39.8
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 1.7e-15 88.2 100 55.0
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 3.0e-15 87.4 116 50.9
Sabra04G0081400 Salix brachista HOM05D001490 ORTHO05D001450 3.9e-15 87.0 100 48.0
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 5.1e-15 86.7 315 38.1
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.5e-14 84.3 157 45.2
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 9.5e-14 82.4 211 38.9
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 2.1e-13 81.3 233 36.9
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 6.2e-13 79.7 232 37.1
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 1.4e-12 78.6 157 43.9
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 2.3e-12 77.8 210 34.3
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 2.3e-12 77.8 157 48.4
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.2e-11 75.5 204 32.8
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.1e-09 68.9 151 36.4
Potri.004G098100 Populus trichocarpa HOM05D001490 ORTHO05D001450 9.2e-09 65.9 38 76.3
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 9.2e-09 65.9 86 53.5
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.5e-08 63.9 122 41.8
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 3.5e-08 63.9 91 56.0
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 3.5e-08 63.9 91 56.0
Thecc.04G132200 Theobroma cacao HOM05D001490 ORTHO05D001450 7.8e-08 62.8 65 46.2
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 1.3e-07 62.0 92 50.0
DCAR_015906 Daucus carota HOM05D001490 ORTHO05D001450 6.6e-07 59.7 86 37.2
Migut.L00331 Erythranthe guttata HOM05D001490 ORTHO05D001450 8.6e-07 59.3 65 46.2
TAR371G0286 Trochodendron aralioides HOM05D001490 ORTHO05D001450 8.6e-07 59.3 86 38.4
MSTRG.15302 Avicennia marina HOM05D001490 ORTHO05D001450 1.5e-06 58.5 66 43.9
EL10Ac2g04554 Beta vulgaris HOM05D001490 ORTHO05D001450 1.5e-06 58.5 65 46.2
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 1.5e-06 58.5 85 49.4
AUR62009012 Chenopodium quinoa HOM05D001490 ORTHO05D001450 1.9e-06 58.2 38 68.4
AUR62023289 Chenopodium quinoa HOM05D001490 ORTHO05D001450 1.9e-06 58.2 38 68.4
AUR62043982 Chenopodium quinoa HOM05D001490 ORTHO05D001450 1.9e-06 58.2 38 68.4
Nitab4.5_0004416g0070 Nicotiana tabacum HOM05D001490 ORTHO05D001450 2.5e-06 57.8 66 43.9
PGSC0003DMG401026390 Solanum tuberosum HOM05D001490 ORTHO05D001450 2.5e-06 57.8 74 43.2
arahy.Tifrunner.gnm1.ann1.6Q2VPL Arachis hypogaea HOM05D001490 ORTHO05D001450 3.3e-06 57.4 41 58.5
CANSAT78G0964 Cannabis sativa HOM05D001490 ORTHO05D001450 3.3e-06 57.4 65 43.1
Cpa.g.sc170.56 Carica papaya HOM05D001490 ORTHO05D001450 3.3e-06 57.4 86 39.5
Ciclev10012586m.g Citrus clementina HOM05D001490 ORTHO05D001450 3.3e-06 57.4 64 45.3
Atru.chr1.1661 Acer truncatum HOM05D001490 ORTHO05D001450 4.3e-06 57.0 65 44.6
Ah.13g073480 Amaranthus hybridus HOM05D001490 ORTHO05D001450 4.3e-06 57.0 56 50.0
CiPaw.04G043100 Carya illinoinensis HOM05D001490 ORTHO05D001450 4.3e-06 57.0 38 65.8
Peaxi162Scf00394g00715 Petunia axillaris HOM05D001490 ORTHO05D001450 4.3e-06 57.0 66 43.9
QL02p051027 Quercus lobata HOM05D001490 ORTHO05D001450 4.3e-06 57.0 38 65.8
QL12p016545 Quercus lobata HOM05D001490 ORTHO05D001450 4.3e-06 57.0 38 65.8
Hund16161 Selenicereus undatus HOM05D001490 ORTHO05D001450 5.6e-06 56.6 38 65.8
Lalb_Chr04g0257521 Lupinus albus HOM05D001490 ORTHO05D001450 7.3e-06 56.2 38 63.2
Solyc02g086150.4 Solanum lycopersicum HOM05D001490 ORTHO05D001450 7.3e-06 56.2 74 41.9
Sopen02g030840 Solanum pennellii HOM05D001490 ORTHO05D001450 7.3e-06 56.2 74 41.9
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 9.6e-06 55.8 188 34.0
SGA_v2.0_scaffold39G15245 Striga asiatica HOM05D001490 ORTHO05D001450 9.6e-06 55.8 66 40.9
SGA_v2.0_scaffold52G19237 Striga asiatica HOM05D001490 ORTHO05D001450 9.6e-06 55.8 66 40.9


User provided reference genes

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