Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 4.0e-193 677.9 345 100.0
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 2.0e-181 639.0 359 91.1
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 4.0e-161 571.6 360 81.7
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 1.9e-158 562.8 359 82.2
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 3.5e-157 558.5 359 79.1
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 1.3e-156 556.6 345 80.6
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 3.0e-156 555.4 352 80.4
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 1.9e-155 552.7 359 78.0
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 4.3e-155 551.6 359 77.4
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 9.6e-155 550.4 359 76.6
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 9.6e-155 550.4 359 76.6
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.3e-154 550.1 359 76.6
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 2.1e-154 549.3 359 76.9
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 2.1e-154 549.3 359 76.9
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 6.2e-154 547.7 359 78.6
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 5.3e-153 544.7 359 76.9
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 9.0e-153 543.9 359 75.8
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 3.2e-150 535.4 359 76.9
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 7.1e-150 534.3 346 80.3
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 3.5e-149 531.9 362 75.7
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 1.8e-148 529.6 359 74.4
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 6.7e-148 527.7 359 75.5
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 3.3e-147 525.4 359 75.2
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 3.3e-147 525.4 359 75.2
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 2.1e-146 522.7 360 75.3
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 6.2e-146 521.2 353 75.6
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 1.4e-145 520.0 360 72.8
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 5.3e-145 518.1 360 71.9
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 9.0e-145 517.3 359 74.1
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 3.4e-144 515.4 355 72.7
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 9.9e-144 513.8 351 73.2
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 9.9e-144 513.8 379 70.7
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 1.3e-143 513.5 360 70.8
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 2.9e-143 512.3 360 72.5
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 3.8e-143 511.9 358 70.4
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 3.8e-143 511.9 360 70.8
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 3.8e-143 511.9 359 71.9
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 4.9e-143 511.5 361 70.6
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 4.9e-143 511.5 360 72.8
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 6.4e-143 511.1 351 72.9
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 1.4e-142 510.0 361 71.7
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 2.4e-142 509.2 361 70.6
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 2.4e-142 509.2 361 70.6
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 3.2e-142 508.8 361 71.2
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 4.2e-142 508.4 361 70.4
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 9.3e-142 507.3 361 70.4
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 1.6e-141 506.5 378 69.8
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 2.7e-141 505.8 361 71.5
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 2.7e-141 505.8 410 64.4
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 4.6e-141 505.0 359 70.5
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 1.0e-140 503.8 323 76.8
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 1.0e-140 503.8 405 66.4
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 1.8e-140 503.1 360 71.7
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 1.9e-139 499.6 345 74.2
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 4.3e-139 498.4 359 71.0
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 5.6e-139 498.0 359 70.2
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 5.6e-139 498.0 360 70.6
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 9.6e-139 497.3 361 70.6
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 3.7e-138 495.4 357 69.5
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 4.5e-136 488.4 343 71.7
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 1.3e-135 486.9 352 69.3
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 1.4e-134 483.4 370 67.8
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 2.3e-132 476.1 344 71.2
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 3.9e-132 475.3 360 67.8
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 1.5e-131 473.4 327 73.7
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 1.1e-129 467.2 367 67.0
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 2.6e-128 462.6 363 66.1
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 2.5e-126 456.1 367 67.3
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 1.3e-122 443.7 344 64.0
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 3.1e-121 439.1 341 63.3
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 3.4e-120 435.6 330 66.7
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 1.4e-118 430.3 358 60.6
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 3.6e-117 425.6 289 76.1
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 7.9e-117 424.5 308 71.8
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 2.3e-116 422.9 308 70.8
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 7.4e-115 417.9 346 62.1
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 5.3e-113 411.8 357 56.9
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 2.2e-111 406.4 429 53.6
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 1.1e-110 404.1 287 70.0
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.8e-108 396.7 384 58.1
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 2.6e-107 392.9 362 58.6
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 1.6e-104 383.6 252 79.0
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 2.2e-103 379.8 364 58.0
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 7.5e-99 364.8 386 55.7
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 5.0e-95 352.1 396 51.5
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 2.3e-92 343.2 334 58.7
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 7.5e-91 338.2 260 68.1
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 6.3e-90 335.1 365 52.6
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 1.8e-81 307.0 309 51.5
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 2.3e-76 290.0 245 60.8
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 5.2e-76 288.9 322 45.7
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 3.2e-73 279.6 162 82.1
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 9.2e-73 278.1 190 75.8
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 2.3e-71 273.5 175 77.7
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 5.0e-71 272.3 175 77.1
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 3.6e-69 266.2 158 81.6
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 2.3e-68 263.5 162 78.4
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 5.8e-67 258.8 175 76.6
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.6e-64 250.8 225 58.2
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 6.6e-63 245.4 168 72.0
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 8.6e-63 245.0 184 65.2
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 1.1e-60 238.0 303 42.2
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 3.5e-56 223.0 179 70.4
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 1.9e-54 217.2 172 65.7
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 4.3e-54 216.1 141 74.5
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 1.4e-52 211.1 123 78.9
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 1.5e-46 191.0 108 82.4
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 6.9e-44 182.2 112 75.9
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 3.8e-42 176.4 134 66.4
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 3.9e-39 166.4 140 57.1
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 4.3e-38 162.9 206 50.0
arahy.Tifrunner.gnm1.ann1.RE0KC5 Arachis hypogaea HOM05D006225 ORTHO05D007676 1.1e-36 158.3 140 58.6
SHI22412 Sapria himalayana HOM05D006225 ORTHO05D007676 2.4e-36 157.1 94 76.6
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 2.9e-34 150.2 100 71.0
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 6.4e-34 149.1 126 58.7
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 3.5e-32 143.3 82 86.6
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 4.6e-32 142.9 148 54.1
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 5.6e-30 136.0 354 29.4
arahy.Tifrunner.gnm1.ann1.A87HRQ Arachis hypogaea HOM05D006225 ORTHO05D007676 5.3e-28 129.4 102 61.8
arahy.Tifrunner.gnm1.ann1.FD2CEU Arachis hypogaea HOM05D006225 ORTHO05D007676 8.4e-26 122.1 104 60.6
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 7.1e-25 119.0 75 72.0
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 4.6e-24 116.3 82 69.5
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 1.5e-22 111.3 113 54.0
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.9e-22 110.9 79 68.4
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 7.4e-22 109.0 78 67.9
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 4.8e-21 106.3 121 42.1
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 4.0e-20 103.2 221 30.3
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 3.4e-19 100.1 75 68.0
arahy.Tifrunner.gnm1.ann1.LDE0EK Arachis hypogaea HOM05D006555 ORTHO05D008376 4.3e-14 83.2 261 24.1
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 6.9e-12 75.9 309 24.6
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 2.0e-11 74.3 313 25.2
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 7.6e-11 72.4 332 22.9
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 1.0e-10 72.0 312 23.7
MELO3C009917.2 Cucumis melo HOM05D006555 ORTHO05D008376 2.2e-10 70.9 255 23.5
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 2.9e-10 70.5 313 24.9
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 3.8e-10 70.1 325 24.3
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 1.1e-09 68.6 308 22.4
Glyma.08G102000 Glycine max HOM05D006555 ORTHO05D008376 2.5e-09 67.4 315 24.4
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 4.2e-09 66.6 146 28.8
Ah.01g015770 Amaranthus hybridus HOM05D006555 ORTHO05D008376 5.5e-09 66.2 309 23.9
VMungo0251G3141 Vigna mungo HOM05D006555 ORTHO05D008376 5.5e-09 66.2 261 24.1
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 7.9e-08 62.4 57 56.1
Sabra05G0090500 Salix brachista HOM05D006555 ORTHO05D008376 7.9e-08 62.4 241 24.5
HPP92_002867 Vanilla planifolia HOM05D006555 ORTHO05D008376 2.3e-07 60.8 172 29.1
Potri.005G110300 Populus trichocarpa HOM05D006555 ORTHO05D008376 5.1e-07 59.7 241 24.9
Phvul.002G176300 Phaseolus vulgaris HOM05D006555 ORTHO05D008376 1.1e-06 58.5 236 25.0
AUR62005932 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.9e-06 57.8 240 23.8
AUR62005935 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.9e-06 57.8 240 23.8
ECA246G4860 Erigeron canadensis HOM05D006555 ORTHO05D008376 3.3e-06 57.0 146 24.7


User provided reference genes

Program Settings