Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 7.8e-155 550.4 282 100.0
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.4e-111 406.0 261 83.5
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.8e-98 363.2 264 76.9
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 7.4e-97 357.8 275 74.5
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.3e-82 309.7 266 69.2
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.3e-80 303.9 264 67.4
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 8.3e-80 301.2 265 70.2
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.1e-79 300.8 267 67.8
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.1e-79 300.8 269 65.4
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 5.4e-79 298.5 270 67.8
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 7.0e-79 298.1 263 69.2
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 5.0e-77 292.0 255 67.1
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 8.6e-77 291.2 270 67.4
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 1.9e-76 290.0 282 63.1
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.9e-76 290.0 264 65.5
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 3.3e-76 289.3 254 68.5
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.6e-75 285.8 269 63.9
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.0e-74 284.3 260 65.0
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.4e-74 283.9 265 66.8
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.8e-74 283.5 275 63.3
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 4.0e-74 282.3 247 67.6
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.0e-73 280.0 270 63.7
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.4e-73 278.9 247 66.8
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 4.4e-73 278.9 267 62.5
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 7.5e-73 278.1 270 63.3
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.7e-72 276.9 259 63.3
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.2e-72 276.6 247 66.4
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 4.9e-72 275.4 247 66.0
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.4e-72 275.0 270 63.0
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 8.3e-72 274.6 275 62.5
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.1e-71 274.2 247 66.0
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.4e-71 273.1 254 65.0
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 3.2e-71 272.7 261 62.8
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 5.4e-71 271.9 270 61.1
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 7.0e-71 271.6 264 63.6
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.2e-70 270.8 254 63.0
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.6e-70 270.4 254 64.6
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.0e-70 270.0 242 68.2
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 3.5e-70 269.2 250 65.6
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.0e-69 267.7 243 67.5
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 8.6e-69 264.6 262 63.0
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.1e-68 264.2 263 62.0
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.1e-68 264.2 263 62.0
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.5e-68 263.8 243 65.8
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 2.5e-68 263.1 250 64.8
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 2.5e-68 263.1 244 66.4
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 5.6e-68 261.9 273 62.3
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 7.3e-68 261.5 267 62.9
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 7.3e-68 261.5 258 61.6
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.2e-67 260.8 250 61.6
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 2.1e-67 260.0 258 61.6
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.0e-66 257.7 269 62.1
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.0e-66 257.7 258 60.5
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 4.0e-66 255.8 269 59.5
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.2e-66 255.4 267 57.7
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 3.4e-65 252.7 250 61.6
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.9e-64 248.8 239 63.6
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 4.9e-64 248.8 264 57.2
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.4e-64 248.4 267 56.6
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 6.4e-64 248.4 244 62.3
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.1e-63 247.7 262 58.4
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 9.2e-63 244.6 255 59.2
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.2e-62 244.2 261 57.5
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.2e-62 244.2 272 57.4
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 2.0e-62 243.4 259 56.8
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.5e-62 242.7 276 58.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 4.6e-62 242.3 270 58.1
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 4.6e-62 242.3 285 55.1
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.0e-61 241.1 271 57.9
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.3e-61 240.7 271 56.8
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.7e-61 240.4 252 57.9
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.0e-61 239.6 273 56.8
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 6.6e-61 238.4 263 57.0
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 8.6e-61 238.0 273 57.1
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.5e-60 237.3 192 69.3
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.5e-60 236.5 271 57.2
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 5.6e-60 235.3 252 56.7
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 2.1e-59 233.4 250 58.4
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 2.8e-59 233.0 248 60.9
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.6e-59 232.6 265 57.0
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 5.2e-58 228.8 257 56.8
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.5e-57 227.3 276 54.0
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.3e-56 224.2 278 50.7
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.9e-56 223.0 254 57.1
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 8.3e-56 221.5 268 56.7
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 8.3e-56 221.5 274 53.6
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.1e-55 221.1 275 52.0
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.4e-55 219.9 263 59.7
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 9.2e-55 218.0 291 56.0
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.2e-54 217.6 267 53.2
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.2e-54 217.6 239 56.9
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.6e-54 215.7 264 53.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 7.8e-54 214.9 261 53.6
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.3e-53 214.2 241 56.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 8.6e-53 211.5 272 50.0
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.1e-52 211.1 293 49.1
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.8e-51 206.5 268 51.5
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 8.1e-51 204.9 249 53.4
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.8e-50 203.8 235 54.5
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 2.3e-50 203.4 268 48.9
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 2.3e-50 203.4 243 53.5
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 3.1e-50 203.0 264 51.1
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 4.4e-49 199.1 256 56.2
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.3e-48 197.6 258 55.0
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.4e-48 195.3 278 48.2
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.1e-47 192.6 259 54.1
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.1e-47 192.6 266 49.6
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 7.1e-47 191.8 260 56.2
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 9.2e-47 191.4 266 54.1
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.2e-46 191.0 238 50.8
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 3.5e-46 189.5 268 52.6
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 3.5e-46 189.5 268 52.6
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.5e-46 189.5 266 47.0
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 4.6e-46 189.1 266 53.8
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 6.0e-46 188.7 265 54.7
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 6.0e-46 188.7 259 53.3
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 7.8e-46 188.3 258 54.3
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.3e-45 187.6 275 46.5
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-45 187.2 263 54.4
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.0e-45 186.4 257 53.7
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 3.9e-45 186.0 266 53.0
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 3.9e-45 186.0 270 53.0
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 3.9e-45 186.0 273 52.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 5.1e-45 185.7 255 50.2
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 5.1e-45 185.7 237 51.5
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.1e-44 184.5 260 53.1
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 2.5e-44 183.3 278 47.5
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 3.3e-44 183.0 265 52.1
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 4.3e-44 182.6 260 52.3
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 9.6e-44 181.4 262 48.9
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 9.6e-44 181.4 264 53.0
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-43 181.0 267 53.9
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-43 181.0 267 53.9
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.6e-43 180.6 253 51.4
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 2.4e-42 176.8 265 52.8
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 5.2e-42 175.6 223 52.5
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.2e-41 174.5 210 51.9
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 4.4e-41 172.6 282 50.7
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.8e-40 169.5 268 45.9
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.2e-39 166.4 264 48.5
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 4.2e-39 166.0 275 45.5
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 7.8e-38 161.8 216 50.0
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 9.6e-36 154.8 267 46.4
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 6.2e-35 152.1 175 55.4
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.5e-33 147.5 167 52.1
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 4.4e-33 146.0 282 44.0
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 8.4e-32 141.7 257 42.4
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.1e-31 141.4 257 42.4
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.4e-31 140.2 215 45.1
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.4e-31 140.2 115 67.8
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 9.3e-31 138.3 257 41.6
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-30 137.9 120 65.0
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 2.7e-30 136.7 205 45.9
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.5e-28 131.0 244 41.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.5e-28 131.0 244 41.0
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 4.3e-28 129.4 217 44.7
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.2e-25 121.3 216 44.4
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.3e-21 107.1 177 45.2
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 2.3e-21 107.1 146 47.9
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 2.8e-19 100.1 80 63.8
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 2.1e-14 84.0 79 59.5
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 3.5e-14 83.2 65 75.4


User provided reference genes

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