Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0082700 Salix brachista HOM05D000139 ORTHO05D000103 5.4e-85 317.8 179 100.0
Potri.017G093966 Populus trichocarpa HOM05D000139 ORTHO05D000103 4.0e-19 99.0 120 52.5
Manes.02G054800 Manihot esculenta HOM05D000139 ORTHO05D000103 5.7e-18 95.1 118 48.3
Potri.017G093833 Populus trichocarpa HOM05D000139 ORTHO05D000103 2.2e-17 93.2 133 46.6
CiPaw.03G088700 Carya illinoinensis HOM05D000139 ORTHO05D000103 2.8e-17 92.8 115 45.2
CiPaw.04G055800 Carya illinoinensis HOM05D000139 ORTHO05D000103 8.3e-17 91.3 116 46.6
QL02p067626 Quercus lobata HOM05D000139 ORTHO05D000103 7.0e-16 88.2 120 43.3
Thecc.04G095500 Theobroma cacao HOM05D000139 ORTHO05D000103 1.6e-15 87.0 129 41.9
Ciclev10011258m.g Citrus clementina HOM05D000139 ORTHO05D000103 4.5e-15 85.5 125 40.8
TWI34G1329 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 4.5e-15 85.5 110 50.0
Haze_14432 Corylus avellana HOM05D000139 ORTHO05D000103 5.9e-15 85.1 115 44.3
Gohir.D04G043700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.0e-14 84.3 119 41.2
Lalb_Chr04g0258431 Lupinus albus HOM05D000139 ORTHO05D000103 1.0e-14 84.3 116 44.8
Manes.01G095800 Manihot esculenta HOM05D000139 ORTHO05D000103 1.0e-14 84.3 118 44.9
arahy.Tifrunner.gnm1.ann1.3BME1Z Arachis hypogaea HOM05D000139 ORTHO05D000103 1.3e-14 84.0 116 44.8
Atru.chr8.457 Acer truncatum HOM05D000139 ORTHO05D000103 1.7e-14 83.6 119 40.3
Glyma.08G245400 Glycine max HOM05D000139 ORTHO05D000103 1.7e-14 83.6 116 46.6
VMungo1383G0504 Vigna mungo HOM05D000139 ORTHO05D000103 1.7e-14 83.6 116 45.7
Gorai.012G048800 Gossypium raimondii HOM05D000139 ORTHO05D000103 2.2e-14 83.2 119 41.2
Oeu004413.1 Olea europaea HOM05D000139 ORTHO05D000103 3.8e-14 82.4 116 37.9
Gohir.A05G372100 Gossypium hirsutum HOM05D000139 ORTHO05D000103 6.5e-14 81.6 119 40.3
Lj1g0024211 Lotus japonicus HOM05D000139 ORTHO05D000103 6.5e-14 81.6 116 43.1
Gohir.A09G009700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.1e-13 80.9 119 42.0
Glyma.18G266600 Glycine max HOM05D000139 ORTHO05D000103 1.5e-13 80.5 116 45.7
Duzib147G0893 Durio zibethinus HOM05D000139 ORTHO05D000103 3.2e-13 79.3 129 41.9
Lalb_Chr10g0092951 Lupinus albus HOM05D000139 ORTHO05D000103 3.2e-13 79.3 116 44.8
Lj4P118T48 Lonicera japonica HOM05D000139 ORTHO05D000103 4.2e-13 79.0 119 38.7
Cfa007666 Carpinus fangiana HOM05D000139 ORTHO05D000103 5.5e-13 78.6 115 41.7
COL.COLO4_07029 Corchorus olitorius HOM05D000139 ORTHO05D000103 7.2e-13 78.2 129 38.0
Gohir.D09G008700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 9.4e-13 77.8 119 41.2
Gorai.006G010500 Gossypium raimondii HOM05D000139 ORTHO05D000103 9.4e-13 77.8 119 41.2
Phvul.008G033400 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 2.1e-12 76.6 116 42.2
Hma1.2p1_0481F.1_g162190 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 3.6e-12 75.9 116 37.9
TWI60G1138 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 6.1e-12 75.1 115 43.5
Duzib187G0247 Durio zibethinus HOM05D000139 ORTHO05D000103 1.0e-11 74.3 129 40.3
Oeu051019.1 Olea europaea HOM05D000139 ORTHO05D000103 1.0e-11 74.3 115 36.5
Lalb_Chr17g0336991 Lupinus albus HOM05D000139 ORTHO05D000103 2.3e-11 73.2 120 41.7
Cc07_g04210 Coffea canephora HOM05D000139 ORTHO05D000103 4.0e-11 72.4 116 37.1
Peaxi162Scf00166g00054 Petunia axillaris HOM05D000139 ORTHO05D000103 8.8e-11 71.2 116 37.9
Rhsim10G0049000 Rhododendron simsii HOM05D000139 ORTHO05D000103 8.8e-11 71.2 115 39.1
Prupe.3G255100 Prunus persica HOM05D000139 ORTHO05D000103 1.5e-10 70.5 85 45.9
RcHm_v2.0_Chr2g0165871 Rosa chinensis HOM05D000139 ORTHO05D000103 3.4e-10 69.3 119 40.3
Psat3g201840 Pisum sativum HOM05D000139 ORTHO05D000103 4.4e-10 68.9 116 39.7
Sed0023705 Sechium edule HOM05D000139 ORTHO05D000103 4.4e-10 68.9 119 39.5
TAR622G0403 Trochodendron aralioides HOM05D000139 ORTHO05D000103 4.4e-10 68.9 115 35.7
MD09G1066500 Malus domestica HOM05D000139 ORTHO05D000103 5.7e-10 68.6 116 38.8
Rhsim10G0049200 Rhododendron simsii HOM05D000139 ORTHO05D000103 5.7e-10 68.6 112 39.3
Nitab4.5_0003841g0070 Nicotiana tabacum HOM05D000139 ORTHO05D000103 7.5e-10 68.2 116 35.3
Solyc02g088800.2 Solanum lycopersicum HOM05D000139 ORTHO05D000103 9.8e-10 67.8 116 36.2
TPR.G33443 Trifolium pratense HOM05D000139 ORTHO05D000103 9.8e-10 67.8 116 38.8
MSTRG.3002 Avicennia marina HOM05D000139 ORTHO05D000103 1.3e-09 67.4 116 34.5
FAN05G1832 Fragaria x ananassa HOM05D000139 ORTHO05D000103 1.3e-09 67.4 119 38.7
CSS0040012 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 1.7e-09 67.0 116 36.2
CAN.G497.105 Capsicum annuum HOM05D000139 ORTHO05D000103 1.7e-09 67.0 116 35.3
CAN.G497.108 Capsicum annuum HOM05D000139 ORTHO05D000103 1.7e-09 67.0 116 35.3
DCAR_025430 Daucus carota HOM05D000139 ORTHO05D000103 1.7e-09 67.0 117 35.9
Manes.02G054900 Manihot esculenta HOM05D000139 ORTHO05D000103 1.7e-09 67.0 115 39.1
Nn3g17455 Nelumbo nucifera HOM05D000139 ORTHO05D000103 1.7e-09 67.0 122 37.7
Nitab4.5_0001637g0050 Nicotiana tabacum HOM05D000139 ORTHO05D000103 1.7e-09 67.0 116 36.2
Potri.017G093700 Populus trichocarpa HOM05D000139 ORTHO05D000103 1.7e-09 67.0 118 40.7
Sopen02g033520 Solanum pennellii HOM05D000139 ORTHO05D000103 1.7e-09 67.0 116 36.2
Ca_04354_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 2.2e-09 66.6 115 38.3
FvH4_6g46900 Fragaria vesca HOM05D000139 ORTHO05D000103 2.2e-09 66.6 119 38.7
FAN09G4150 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.2e-09 66.6 119 38.7
FAN14G3131 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.2e-09 66.6 119 38.7
Peaxi162Scf00166g00053 Petunia axillaris HOM05D000139 ORTHO05D000103 2.2e-09 66.6 116 36.2
Medtr7g013770 Medicago truncatula HOM05D000139 ORTHO05D000103 2.8e-09 66.2 116 37.1
Nitab4.5_0006731g0020 Nicotiana tabacum HOM05D000139 ORTHO05D000103 2.8e-09 66.2 116 35.3
PGSC0003DMG400001454 Solanum tuberosum HOM05D000139 ORTHO05D000103 2.8e-09 66.2 116 35.3
CsaV3_4G009180 Cucumis sativus L. HOM05D000139 ORTHO05D000103 3.7e-09 65.9 119 39.5
Nn4g23431 Nelumbo nucifera HOM05D000139 ORTHO05D000103 3.7e-09 65.9 121 34.7
Peaxi162Scf00451g00019 Petunia axillaris HOM05D000139 ORTHO05D000103 3.7e-09 65.9 116 35.3
CANSAT64G1740 Cannabis sativa HOM05D000139 ORTHO05D000103 4.9e-09 65.5 151 31.8
CSS0007544 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 6.3e-09 65.1 113 34.5
CSS0030363 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 6.3e-09 65.1 113 34.5
Nitab4.5_0002960g0030 Nicotiana tabacum HOM05D000139 ORTHO05D000103 6.3e-09 65.1 116 35.3
PSO478G2618 Papaver somniferum HOM05D000139 ORTHO05D000103 6.3e-09 65.1 117 37.6
Sc14g0006240 Simmondsia chinensis HOM05D000139 ORTHO05D000103 6.3e-09 65.1 119 36.1
Sc14g0006310 Simmondsia chinensis HOM05D000139 ORTHO05D000103 6.3e-09 65.1 119 36.1
Thecc.03G102100 Theobroma cacao HOM05D000139 ORTHO05D000103 6.3e-09 65.1 64 51.6
PSO017G1911 Papaver somniferum HOM05D000139 ORTHO05D000103 8.3e-09 64.7 117 37.6
MELO3C024880.2 Cucumis melo HOM05D000139 ORTHO05D000103 1.1e-08 64.3 119 38.7
Duzib068G0846 Durio zibethinus HOM05D000139 ORTHO05D000103 2.4e-08 63.2 63 50.8
MD17G1059400 Malus domestica HOM05D000139 ORTHO05D000103 4.1e-08 62.4 116 37.9
Aa31LG2G3890 Aethionema arabicum HOM05D000139 ORTHO05D000103 5.4e-08 62.0 121 34.7
COL.COLO4_06854 Corchorus olitorius HOM05D000139 ORTHO05D000103 5.4e-08 62.0 83 37.3
ECA232G4904 Erigeron canadensis HOM05D000139 ORTHO05D000103 5.4e-08 62.0 116 33.6
BcaC06g33693 Brassica carinata HOM05D000139 ORTHO05D000103 7.0e-08 61.6 119 36.1
C07p38270 Brassica napus HOM05D000139 ORTHO05D000103 7.0e-08 61.6 119 36.1
BolC7t44350H Brassica oleracea HOM05D000139 ORTHO05D000103 7.0e-08 61.6 119 36.1
Cfa019336 Carpinus fangiana HOM05D000139 ORTHO05D000103 9.1e-08 61.2 62 50.0
PGR004G2842 Punica granatum HOM05D000139 ORTHO05D000103 9.1e-08 61.2 117 33.3
Dinv22778 Davidia involucrata HOM05D000139 ORTHO05D000103 1.2e-07 60.8 67 49.3
Eucgr.I02032 Eucalyptus grandis HOM05D000139 ORTHO05D000103 1.2e-07 60.8 110 35.5
QL10p019598 Quercus lobata HOM05D000139 ORTHO05D000103 2.0e-07 60.1 72 44.4
MBI16_g11608_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 2.7e-07 59.7 86 34.9
Manes.06G084400 Manihot esculenta HOM05D000139 ORTHO05D000103 2.7e-07 59.7 71 42.3
Sabra17G0082800 Salix brachista HOM05D000139 ORTHO05D000103 2.7e-07 59.7 118 37.3
ECA246G1878 Erigeron canadensis HOM05D000139 ORTHO05D000103 3.5e-07 59.3 122 33.6
MBI19_g20951_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 3.5e-07 59.3 85 35.3
THA.LOC104805512 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 3.5e-07 59.3 114 35.1
COL.COLO4_21403 Corchorus olitorius HOM05D000139 ORTHO05D000103 4.5e-07 58.9 109 39.4
Haze_07725 Corylus avellana HOM05D000139 ORTHO05D000103 4.5e-07 58.9 62 48.4
Gohir.D12G185900 Gossypium hirsutum HOM05D000139 ORTHO05D000103 4.5e-07 58.9 66 43.9
Gorai.008G199300 Gossypium raimondii HOM05D000139 ORTHO05D000103 4.5e-07 58.9 66 43.9
BcaC06g30861 Brassica carinata HOM05D000139 ORTHO05D000103 7.7e-07 58.2 119 31.9
Carub.0005s0815 Capsella rubella HOM05D000139 ORTHO05D000103 1.0e-06 57.8 116 31.9
Ah.10g032280 Amaranthus hybridus HOM05D000139 ORTHO05D000103 1.3e-06 57.4 114 36.0
C04p18160 Brassica napus HOM05D000139 ORTHO05D000103 1.3e-06 57.4 116 31.9
BolC4t23371H Brassica oleracea HOM05D000139 ORTHO05D000103 1.3e-06 57.4 116 31.9
Carub.0008s2170 Capsella rubella HOM05D000139 ORTHO05D000103 1.3e-06 57.4 62 45.2
Phvul.009G201800 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 1.3e-06 57.4 78 37.2
A06p39880 Brassica napus HOM05D000139 ORTHO05D000103 1.7e-06 57.0 116 30.2
BraA06t26902Z Brassica rapa HOM05D000139 ORTHO05D000103 1.7e-06 57.0 116 30.2
MBI19_g27983_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 1.7e-06 57.0 119 31.1
Sed0018848 Sechium edule HOM05D000139 ORTHO05D000103 1.7e-06 57.0 67 46.3
VMungo1309G0592 Vigna mungo HOM05D000139 ORTHO05D000103 1.7e-06 57.0 77 36.4
GSVIVG01007863001 Vitis vinifera HOM05D000139 ORTHO05D000103 1.7e-06 57.0 63 46.0
CARHR153060 Cardamine hirsuta HOM05D000139 ORTHO05D000103 2.9e-06 56.2 119 36.1
CARHR274720 Cardamine hirsuta HOM05D000139 ORTHO05D000103 2.9e-06 56.2 71 43.7
Duzib084G0180 Durio zibethinus HOM05D000139 ORTHO05D000103 2.9e-06 56.2 62 46.8
BcaB07g30078 Brassica carinata HOM05D000139 ORTHO05D000103 3.8e-06 55.8 121 31.4
Sp2g18000 Schrenkiella parvula HOM05D000139 ORTHO05D000103 3.8e-06 55.8 120 30.0
A02p36650 Brassica napus HOM05D000139 ORTHO05D000103 5.0e-06 55.5 121 33.1
AUR62038671 Chenopodium quinoa HOM05D000139 ORTHO05D000103 5.0e-06 55.5 115 35.7
AT3G29400 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 8.6e-06 54.7 119 34.5
EL10Ac2g03141 Beta vulgaris HOM05D000139 ORTHO05D000103 8.6e-06 54.7 114 35.1
CSS0036454 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 8.6e-06 54.7 67 43.3
Glyma.06G203900 Glycine max HOM05D000139 ORTHO05D000103 8.6e-06 54.7 70 41.4
Gohir.A12G182800 Gossypium hirsutum HOM05D000139 ORTHO05D000103 8.6e-06 54.7 66 40.9


User provided reference genes

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