Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 0.0e+00 1124.8 610 100.0
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 5.4e-302 1040.4 613 91.7
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 3.9e-199 698.7 642 65.0
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 1.8e-188 663.3 643 62.1
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 1.7e-186 656.8 599 63.6
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 4.3e-182 642.1 627 60.9
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 4.0e-180 635.6 627 61.2
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 2.2e-178 629.8 629 61.7
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 4.7e-173 612.1 626 60.2
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.8e-172 610.1 627 59.3
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 2.0e-171 606.7 627 60.9
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 8.4e-170 601.3 617 60.8
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 1.3e-167 594.0 617 58.8
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 7.3e-166 588.2 662 56.6
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 1.3e-165 587.4 643 57.2
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 2.1e-165 586.6 642 57.5
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 3.6e-165 585.9 599 60.1
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 4.8e-165 585.5 701 53.1
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.1e-164 582.8 640 55.9
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 1.5e-163 580.5 626 58.3
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.0e-163 580.1 626 56.5
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 2.0e-163 580.1 643 56.9
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 6.4e-162 575.1 614 57.3
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 6.4e-162 575.1 640 57.2
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 2.4e-161 573.2 651 57.9
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.7e-160 569.7 466 68.2
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 7.9e-160 568.2 610 59.7
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 6.6e-159 565.1 614 57.2
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 5.6e-158 562.0 499 63.9
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 7.6e-155 551.6 694 52.3
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.4e-153 546.6 658 54.9
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 7.1e-153 545.0 622 54.3
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 6.7e-151 538.5 638 54.9
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 2.8e-149 533.1 672 51.3
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 5.8e-147 525.4 662 52.6
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 8.4e-146 521.5 757 48.5
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.6e-144 517.3 757 48.0
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 5.1e-143 512.3 622 51.4
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 3.4e-139 499.6 621 53.0
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 4.5e-139 499.2 549 55.7
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 5.8e-139 498.8 620 53.4
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 1.3e-138 497.7 640 53.8
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 1.9e-137 493.8 534 57.1
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 7.1e-137 491.9 587 52.8
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.1e-136 490.3 560 53.0
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 7.9e-136 488.4 612 52.0
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 1.3e-135 487.6 582 55.0
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 5.1e-135 485.7 609 54.5
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 2.5e-134 483.4 619 51.9
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 1.6e-133 480.7 611 52.0
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.7e-133 479.6 504 57.9
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 3.7e-133 479.6 617 51.5
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 5.3e-132 475.7 504 58.3
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 1.2e-131 474.6 614 50.2
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 3.4e-131 473.0 603 52.7
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 2.2e-130 470.3 600 51.2
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 4.2e-129 466.1 595 53.6
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 5.5e-129 465.7 595 53.3
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 5.5e-129 465.7 612 52.1
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 3.0e-127 459.9 696 46.7
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 3.9e-127 459.5 611 51.6
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 8.8e-127 458.4 597 49.9
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.1e-126 458.0 637 49.8
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.5e-126 457.6 600 52.7
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 1.4e-124 451.1 679 45.4
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 1.8e-124 450.7 679 47.6
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.1e-124 449.9 607 48.8
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 6.9e-124 448.7 656 48.3
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 9.1e-124 448.4 401 62.3
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 4.5e-123 446.0 608 50.7
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.0e-122 444.9 600 52.0
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 1.3e-122 444.5 597 50.8
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 1.3e-122 444.5 623 49.4
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.7e-122 444.1 491 53.6
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 2.2e-122 443.7 485 54.8
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 5.0e-122 442.6 597 50.6
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 5.0e-122 442.6 597 50.6
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 7.9e-120 435.3 626 50.3
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.6e-118 430.3 658 45.6
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 6.3e-117 425.6 599 47.1
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 1.1e-116 424.9 475 53.1
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 5.3e-116 422.5 587 46.2
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.0e-114 418.3 467 56.1
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 4.2e-113 412.9 518 51.9
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 9.4e-113 411.8 507 52.7
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 1.2e-112 411.4 792 40.9
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 2.3e-111 407.1 487 51.5
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.5e-110 404.4 576 50.2
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 2.0e-110 404.1 491 53.4
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 5.0e-106 389.4 621 44.4
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 1.5e-105 387.9 411 55.0
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 3.6e-104 383.3 614 46.7
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 4.7e-104 382.9 549 48.3
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.0e-95 355.1 625 40.8
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.5e-91 340.1 367 56.4
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.9e-90 337.0 260 69.6
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 8.6e-90 335.5 418 52.4
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 8.6e-90 335.5 250 70.4
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 8.3e-85 318.9 368 55.4
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.5e-83 313.5 388 51.3
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.5e-83 313.5 388 51.3
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.7e-75 287.3 252 65.5
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 2.7e-75 287.3 614 36.8
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.1e-72 277.7 298 55.7
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 3.7e-69 266.9 310 50.6
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 4.6e-67 260.0 366 48.1
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.5e-65 254.2 251 61.8
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 5.8e-54 216.5 373 40.5
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 1.7e-53 214.9 351 41.3
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.6e-51 208.4 245 51.4
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 8.7e-50 202.6 173 65.9
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 1.3e-40 172.2 159 61.6
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 7.6e-38 162.9 144 58.3
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 2.9e-37 161.0 237 45.1
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 3.8e-37 160.6 129 65.9
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 4.6e-35 153.7 99 79.8
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 2.1e-32 144.8 99 76.8
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 2.8e-32 144.4 174 53.4
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 8.4e-29 132.9 268 37.3
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 5.1e-26 123.6 234 40.2
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 4.1e-23 114.0 167 43.7
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 1.7e-21 108.6 353 28.3
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 2.8e-16 91.3 70 67.1
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.1e-15 87.4 179 37.4
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 1.7e-13 82.0 71 59.2
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 3.2e-12 77.8 109 43.1
CAN.G484.129 Capsicum annuum HOM05D000032 ORTHO05D005217 2.6e-06 58.2 166 33.7
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 4.5e-06 57.4 135 40.0
MSTRG.19133 Avicennia marina HOM05D000032 ORTHO05D005217 5.9e-06 57.0 166 34.3
Dinv41857 Davidia involucrata HOM05D000032 ORTHO05D005217 5.9e-06 57.0 166 34.9


User provided reference genes

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