Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 8.0e-132 473.8 242 100.0
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 2.0e-74 283.1 203 76.4
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 3.3e-45 186.0 214 50.9
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 3.7e-44 182.6 202 51.5
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 3.7e-44 182.6 202 51.5
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.4e-40 170.6 207 48.8
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 1.6e-39 167.2 202 47.5
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 4.7e-39 165.6 213 46.9
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 3.0e-38 162.9 196 50.5
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 3.0e-38 162.9 196 49.5
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 8.8e-38 161.4 209 45.9
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 8.8e-38 161.4 217 46.1
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 8.8e-38 161.4 188 50.5
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 2.6e-37 159.8 206 48.5
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 9.7e-37 157.9 199 46.2
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 1.7e-36 157.1 217 44.7
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 4.1e-35 152.5 196 46.4
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.6e-34 149.8 195 45.1
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 4.5e-34 149.1 196 45.4
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 5.9e-34 148.7 202 46.0
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.3e-33 147.5 206 43.7
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 8.5e-33 144.8 218 43.1
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 1.5e-32 144.1 204 43.1
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.2e-32 142.5 217 43.3
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.2e-32 142.5 217 43.3
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 8.0e-31 138.3 196 42.3
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 8.0e-31 138.3 196 41.8
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.8e-30 137.1 210 41.0
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 2.3e-30 136.7 196 42.3
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.3e-30 136.7 202 42.6
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 4.0e-30 136.0 200 39.0
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 4.0e-30 136.0 196 43.4
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 4.0e-30 136.0 213 41.3
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 8.8e-30 134.8 209 38.3
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.1e-29 134.4 202 42.1
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 1.1e-29 134.4 204 41.7
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 3.3e-29 132.9 211 39.8
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 3.3e-29 132.9 194 38.1
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 4.4e-29 132.5 213 39.0
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 7.5e-29 131.7 216 40.3
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 1.7e-28 130.6 202 40.6
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.7e-28 130.6 186 40.3
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 2.2e-28 130.2 203 39.4
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 2.8e-28 129.8 206 37.4
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 2.8e-28 129.8 194 38.1
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.7e-28 129.4 225 37.3
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.8e-28 129.0 219 39.7
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 8.2e-28 128.3 219 39.7
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 1.1e-27 127.9 203 39.4
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.1e-27 127.9 220 36.4
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.4e-27 127.5 201 39.3
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 3.1e-27 126.3 202 38.1
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 3.1e-27 126.3 202 38.1
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 5.3e-27 125.6 199 42.7
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 9.1e-27 124.8 204 37.3
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 9.1e-27 124.8 200 37.0
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 9.1e-27 124.8 194 37.6
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.6e-26 124.0 202 39.1
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.6e-26 124.0 203 39.9
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 2.0e-26 123.6 213 37.1
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.0e-26 123.6 200 38.0
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 2.7e-26 123.2 202 37.1
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 7.7e-26 121.7 172 44.8
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 1.0e-25 121.3 200 37.5
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 1.7e-25 120.6 204 36.3
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.7e-25 120.6 192 38.0
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 2.2e-25 120.2 202 36.1
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 2.2e-25 120.2 202 36.1
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 2.2e-25 120.2 202 36.6
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 3.8e-25 119.4 202 36.6
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 3.8e-25 119.4 196 39.8
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 5.0e-25 119.0 202 37.1
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 5.0e-25 119.0 200 36.5
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 6.5e-25 118.6 200 36.0
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 6.5e-25 118.6 201 36.8
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 1.1e-24 117.9 181 38.7
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 5.5e-24 115.5 215 34.4
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 5.5e-24 115.5 202 35.6
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 5.5e-24 115.5 194 35.6
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.2e-23 114.4 212 35.8
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.6e-23 114.0 191 38.7
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 2.1e-23 113.6 207 37.2
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 3.6e-23 112.8 207 35.7
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 4.7e-23 112.5 195 34.9
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 6.1e-23 112.1 189 39.7
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.0e-22 111.3 246 33.3
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.3e-22 110.2 197 39.6
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 2.3e-22 110.2 195 33.8
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 4.0e-22 109.4 119 51.3
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.2e-21 107.8 202 36.1
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.5e-21 107.5 216 36.6
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 1.5e-21 107.5 106 52.8
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 1.5e-21 107.5 170 37.1
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 2.0e-21 107.1 209 34.4
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 2.6e-21 106.7 185 37.8
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 3.4e-21 106.3 200 36.0
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 9.8e-21 104.8 200 36.0
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 9.8e-21 104.8 218 32.6
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.3e-20 104.4 201 34.8
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.7e-20 102.8 195 33.8
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 3.7e-20 102.8 203 33.5
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.4e-19 100.9 211 34.1
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.4e-19 100.1 209 33.0
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 4.1e-19 99.4 92 47.8
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.1e-19 99.4 195 33.3
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 7.0e-19 98.6 178 36.5
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.0e-18 97.1 198 32.8
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 2.7e-18 96.7 183 35.0
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.5e-18 96.3 211 33.6
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 4.5e-18 95.9 188 35.6
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 7.7e-18 95.1 199 31.7
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.1e-16 91.3 194 34.0
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 2.5e-16 90.1 194 34.0
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.2e-16 89.7 194 30.9
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 3.2e-16 89.7 172 36.6
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 5.5e-16 89.0 193 31.6
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 4.0e-14 82.8 202 30.7
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 4.0e-14 82.8 202 30.7
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 6.8e-14 82.0 156 39.1
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 1.2e-13 81.3 99 45.5
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.4e-13 79.7 119 37.8
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 7.5e-13 78.6 90 45.6
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 1.1e-11 74.7 213 31.9
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.2e-10 71.2 144 32.6
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.0e-10 70.5 198 29.3
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 2.7e-10 70.1 189 28.6
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.9e-08 63.9 186 27.4
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 4.3e-08 62.8 147 34.7
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 2.8e-07 60.1 196 26.5
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 8.0e-07 58.5 187 28.3
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 5.2e-06 55.8 70 42.9


User provided reference genes

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