Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 3.0e-273 944.9 584 100.0
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 1.5e-229 799.7 583 88.7
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 2.6e-144 516.5 581 60.9
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 6.8e-137 491.9 581 59.9
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 7.3e-131 471.9 577 57.9
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 4.9e-127 459.1 582 57.4
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 2.8e-122 443.4 510 61.4
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 8.1e-122 441.8 496 62.7
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 2.0e-120 437.2 576 55.9
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 6.4e-119 432.2 581 55.6
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 6.0e-117 425.6 381 76.4
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.3e-116 423.7 409 70.2
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 5.1e-116 422.5 506 60.3
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.5e-115 421.0 409 70.2
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 4.3e-115 419.5 409 69.7
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 4.3e-115 419.5 396 72.5
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 7.4e-115 418.7 523 60.2
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 1.3e-114 417.9 578 54.7
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 2.8e-114 416.8 409 69.4
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 4.8e-114 416.0 489 56.0
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 8.1e-114 415.2 410 70.2
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 3.4e-112 409.8 401 70.1
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 5.8e-112 409.1 410 69.5
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.2e-111 407.1 410 69.3
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 1.9e-110 404.1 535 57.0
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 4.2e-110 402.9 576 49.8
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 3.5e-109 399.8 585 52.8
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 1.1e-105 388.3 585 52.3
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 1.7e-103 380.9 404 66.8
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 2.2e-103 380.6 404 65.8
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 2.9e-103 380.2 488 55.9
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 1.9e-102 377.5 387 69.3
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 3.5e-101 373.2 392 67.3
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 1.3e-100 371.3 565 52.2
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 1.8e-100 370.9 412 63.3
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.9e-99 367.5 396 65.2
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 2.5e-99 367.1 388 65.2
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 3.3e-99 366.7 570 52.1
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 2.2e-98 364.0 389 66.6
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 1.1e-97 361.7 396 65.4
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 3.1e-97 360.1 396 65.4
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 1.2e-96 358.2 389 66.3
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 1.7e-95 354.4 410 63.2
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 1.4e-94 351.3 400 64.2
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 2.5e-94 350.5 403 64.0
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 4.2e-94 349.7 529 52.4
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 2.1e-93 347.4 389 64.8
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 2.3e-92 344.0 387 64.9
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 8.8e-92 342.0 386 63.0
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 1.1e-91 341.7 533 52.3
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 1.5e-91 341.3 390 62.1
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 1.5e-91 341.3 390 61.8
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 2.0e-91 340.9 390 61.8
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 9.7e-91 338.6 530 53.6
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 1.4e-89 334.7 390 61.8
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 3.1e-89 333.6 407 61.7
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 4.1e-89 333.2 388 63.9
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 9.1e-89 332.0 401 61.8
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 4.5e-88 329.7 396 63.1
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 7.7e-88 328.9 390 61.0
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 2.2e-87 327.4 576 48.6
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 8.5e-87 325.5 393 46.3
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 8.5e-87 325.5 393 46.3
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 8.5e-87 325.5 496 53.6
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 1.1e-86 325.1 390 60.3
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 2.5e-86 323.9 383 63.2
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 3.2e-86 323.6 390 63.6
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 9.4e-86 322.0 378 61.6
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 1.0e-84 318.5 325 71.4
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 5.7e-83 312.8 351 66.7
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 1.7e-82 311.2 390 61.5
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.8e-81 307.8 402 60.2
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 3.1e-81 307.0 483 53.2
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 5.3e-81 306.2 387 60.7
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.5e-80 304.7 410 58.3
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 2.0e-80 304.3 390 61.3
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.9e-78 297.7 342 46.5
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 6.1e-77 292.7 390 59.7
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 5.7e-75 286.2 386 59.3
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 7.5e-75 285.8 400 57.5
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 7.5e-75 285.8 583 45.8
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 1.3e-74 285.0 388 59.5
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 1.1e-73 282.0 412 57.5
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 1.2e-69 268.5 390 54.1
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 2.7e-69 267.3 391 55.2
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 2.7e-69 267.3 357 59.7
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 8.0e-69 265.8 395 57.0
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 1.0e-68 265.4 402 56.0
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 2.3e-68 264.2 391 55.0
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 2.4e-65 254.2 410 53.7
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 2.4e-65 254.2 388 56.7
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 4.1e-65 253.4 391 51.9
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 2.5e-62 244.2 408 51.0
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 1.0e-60 238.8 401 53.6
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 2.4e-57 227.6 204 55.9
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 6.6e-55 219.5 216 51.4
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 8.6e-55 219.2 193 57.0
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 1.5e-54 218.4 191 56.5
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 1.5e-54 218.4 191 56.5
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 6.4e-50 203.0 389 52.7
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 1.9e-41 174.9 301 35.9
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 1.9e-41 174.9 301 35.9
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 9.2e-33 146.0 122 60.7
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 2.6e-27 127.9 265 32.8
Oeu041338.1 Olea europaea HOM05D000001 ORTHO05D000003 7.1e-09 66.6 140 33.6
SMO275G0048 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 1.2e-08 65.9 159 30.8
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 1.6e-08 65.5 142 30.3
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 1.6e-08 65.5 170 28.8
Hund16566 Selenicereus undatus HOM05D000001 ORTHO05D010372 3.5e-08 64.3 159 24.5
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 6.0e-08 63.5 170 28.8
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 6.0e-08 63.5 170 28.8
FAN05G4663 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.9e-08 63.2 162 25.3
FAN05G5711 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.9e-08 63.2 162 25.3
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 1.0e-07 62.8 170 28.8
Ca_10409_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 1.3e-07 62.4 141 31.2
FvH4_6g10271 Fragaria vesca HOM05D000001 ORTHO05D000003 1.3e-07 62.4 162 25.3
FAN14G1143 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-07 62.4 162 25.3
AT1G22830 Arabidopsis thaliana HOM05D000001 ORTHO05D007291 2.3e-07 61.6 192 24.5
Ca_16633_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009739 2.3e-07 61.6 193 24.9
Sp1g20310 Schrenkiella parvula HOM05D000001 ORTHO05D007291 2.3e-07 61.6 191 23.0
TPR.G6304 Trifolium pratense HOM05D000001 ORTHO05D009739 2.3e-07 61.6 186 25.3
CiPaw.10G023600 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.1e-07 60.5 172 26.7
Phvul.007G135000 Phaseolus vulgaris HOM05D002479 ORTHO05D002675 5.1e-07 60.5 95 32.6
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 6.6e-07 60.1 184 28.3
CARHR023180 Cardamine hirsuta HOM05D000001 ORTHO05D007291 6.6e-07 60.1 191 23.0
Psat6g170520 Pisum sativum HOM05D002479 ORTHO05D002675 6.6e-07 60.1 129 31.0
AUR62008589 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.1e-06 59.3 150 25.3
Peaxi162Scf00788g00034 Petunia axillaris HOM05D002479 ORTHO05D002675 1.1e-06 59.3 77 36.4
Medtr1g090120 Medicago truncatula HOM05D002479 ORTHO05D002675 1.9e-06 58.5 129 30.2
Ah.06g188680 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.5e-06 58.2 77 35.1
Ah.06g188690 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.5e-06 58.2 77 35.1
ATR1089G152 Amborella trichopoda HOM05D002825 ORTHO05D003824 2.5e-06 58.2 164 26.2
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 2.5e-06 58.2 36 69.4
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 2.5e-06 58.2 36 69.4
Lalb_Chr21g0312681 Lupinus albus HOM05D002479 ORTHO05D002675 2.5e-06 58.2 128 30.5
PGR004G2474 Punica granatum HOM05D000001 ORTHO05D000003 2.5e-06 58.2 153 25.5
AagrBONN_evm.TU.Sc2ySwM_344.2227 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 57.8 198 26.3
CDE04G0593 Ceratophyllum demersum HOM05D000001 ORTHO05D000003 3.3e-06 57.8 160 24.4
MD07G1126900 Malus domestica HOM05D000001 ORTHO05D000003 3.3e-06 57.8 184 25.0
Nitab4.5_0000895g0210 Nicotiana tabacum HOM05D001779 ORTHO05D001753 3.3e-06 57.8 116 31.9
Ciclev10027602m.g Citrus clementina HOM05D000001 ORTHO05D009948 4.3e-06 57.4 153 27.5
Glyma.20G197300 Glycine max HOM05D002479 ORTHO05D002675 4.3e-06 57.4 95 30.5
MSTRG.27036 Avicennia marina HOM05D000001 ORTHO05D000003 5.6e-06 57.0 119 31.9
Nitab4.5_0001856g0030 Nicotiana tabacum HOM05D003117 ORTHO05D003612 5.6e-06 57.0 77 33.8
Carub.0001s2233 Capsella rubella HOM05D000001 ORTHO05D007291 9.6e-06 56.2 185 21.6
AUR62006894 Chenopodium quinoa HOM05D002479 ORTHO05D002675 9.6e-06 56.2 77 35.1
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 9.6e-06 56.2 124 30.6
Nitab4.5_0007585g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 9.6e-06 56.2 77 33.8


User provided reference genes

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