Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 3.3e-286 987.6 485 100.0
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.3e-263 912.5 486 92.2
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 2.3e-231 805.4 486 81.7
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.1e-228 796.6 483 80.7
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 9.1e-228 793.5 485 80.0
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 5.9e-227 790.8 485 79.6
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 8.5e-226 786.9 488 79.1
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 1.0e-223 780.0 484 79.3
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.6e-222 775.4 487 79.5
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 8.3e-221 770.4 488 76.8
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.4e-220 769.6 486 78.2
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.4e-220 767.7 487 78.9
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 9.2e-220 766.9 495 76.0
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.6e-219 766.1 501 76.8
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.6e-219 766.1 484 76.7
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.5e-217 759.6 481 77.3
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.9e-217 759.2 491 77.6
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 2.5e-217 758.8 486 77.4
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.6e-216 756.1 491 78.0
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 2.3e-215 752.3 492 75.2
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 4.0e-215 751.5 484 76.2
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 5.2e-215 751.1 488 76.6
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 8.9e-215 750.4 482 76.1
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 2.6e-214 748.8 471 77.7
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 3.4e-214 748.4 470 77.4
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 3.4e-214 748.4 473 76.5
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 7.5e-214 747.3 487 75.6
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.7e-213 746.1 488 74.8
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 2.2e-213 745.7 488 75.6
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 3.7e-213 745.0 426 81.7
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 3.7e-213 745.0 426 82.4
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 2.4e-212 742.3 491 76.8
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 3.2e-212 741.9 463 76.0
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 3.2e-212 741.9 487 77.4
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 4.1e-212 741.5 484 75.6
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 4.1e-212 741.5 485 74.0
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 4.1e-212 741.5 426 81.7
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 4.1e-212 741.5 426 80.8
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 7.0e-212 740.7 485 73.8
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 9.2e-212 740.3 486 74.9
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.2e-211 740.0 487 73.7
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.6e-211 739.6 492 75.6
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.6e-211 739.6 427 81.5
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 2.0e-211 739.2 486 74.1
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.7e-211 738.8 490 76.1
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 3.5e-211 738.4 425 80.9
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 4.6e-211 738.0 494 73.7
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.0e-210 736.9 424 83.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.3e-210 736.5 533 70.2
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.7e-210 736.1 484 74.6
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.3e-210 735.7 484 74.4
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 3.0e-210 735.3 491 74.1
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 3.9e-210 734.9 486 73.3
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.9e-209 732.6 485 73.6
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.5e-209 732.3 449 77.1
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 5.6e-209 731.1 486 72.4
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 7.3e-209 730.7 487 71.9
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 7.3e-209 730.7 426 80.5
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 1.2e-208 729.9 486 73.7
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.2e-208 729.9 484 75.4
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.6e-208 729.6 485 72.4
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.6e-208 729.6 485 72.4
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.6e-208 729.6 491 73.1
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.0e-208 727.2 490 72.7
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 1.0e-207 726.9 485 72.6
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 1.0e-207 726.9 485 72.6
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 2.3e-207 725.7 487 74.9
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 4.0e-207 724.9 496 70.2
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 5.2e-207 724.5 426 80.5
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 5.2e-207 724.5 483 74.1
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.2e-206 723.4 486 74.1
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 2.6e-206 722.2 424 79.5
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 4.4e-206 721.5 461 74.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.9e-205 718.8 486 71.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.1e-204 716.8 490 73.1
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 3.2e-204 715.3 492 71.5
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.2e-203 713.4 484 71.9
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.2e-203 713.4 445 77.5
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.6e-203 711.4 426 79.1
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 6.0e-203 711.1 422 79.6
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 7.8e-203 710.7 404 83.2
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.0e-202 710.3 424 79.2
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 8.6e-202 707.2 425 77.6
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 9.5e-201 703.7 451 74.9
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.4e-199 699.9 405 81.2
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.8e-199 699.5 439 77.4
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 7.5e-198 694.1 427 77.8
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 9.2e-196 687.2 401 80.8
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 7.8e-195 684.1 463 71.9
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.1e-191 672.2 378 84.1
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.2e-191 671.4 543 65.0
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.3e-189 666.8 473 70.2
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 2.9e-189 665.6 467 72.4
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 5.1e-186 654.8 424 73.1
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 7.3e-185 651.0 485 70.1
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.2e-184 647.9 411 75.9
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.8e-181 638.6 378 79.1
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.9e-177 626.3 422 72.7
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 2.5e-177 625.9 394 75.4
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 2.4e-175 619.4 341 84.8
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 5.3e-175 618.2 424 68.6
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 7.6e-174 614.4 474 65.2
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 3.3e-169 599.0 390 73.3
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 9.6e-169 597.4 447 63.1
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 6.9e-167 591.3 378 75.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 2.6e-166 589.3 492 62.2
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.5e-161 573.5 406 68.2
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 6.2e-160 568.2 496 56.9
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 6.3e-152 541.6 380 69.7
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 2.0e-150 536.6 326 79.1
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 6.1e-147 525.0 466 57.7
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 2.2e-141 506.5 458 56.1
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 2.6e-126 456.4 256 82.0
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 1.0e-122 444.5 297 70.7
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 1.0e-122 444.5 297 70.7
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 7.2e-116 421.8 348 61.5
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 6.8e-114 415.2 391 52.9
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 9.8e-113 411.4 295 66.8
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.0e-106 391.3 285 65.6
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 2.3e-106 390.2 270 70.4
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 2.0e-105 387.1 264 69.7
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.2e-104 383.6 294 65.3
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.4e-89 333.2 383 45.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.3e-88 331.3 208 76.0
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.0e-77 295.0 235 66.8
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 3.3e-76 290.0 331 45.3
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.1e-75 287.3 250 59.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.1e-66 258.5 580 31.9
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.6e-52 209.5 458 33.2
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.8e-48 196.8 110 81.8
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.8e-40 170.2 109 71.6
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 1.6e-35 154.8 110 70.0
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 2.9e-32 144.1 82 74.4
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 1.4e-29 135.2 94 74.5
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 3.0e-21 107.5 60 73.3
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 8.8e-21 105.9 74 67.6
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 8.8e-21 105.9 69 71.0
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 3.3e-20 104.0 69 69.6
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 3.3e-20 104.0 69 69.6
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 5.7e-20 103.2 92 56.5
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 7.4e-20 102.8 69 69.6
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 9.7e-20 102.4 68 70.6
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 3.7e-19 100.5 70 67.1
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 4.8e-19 100.1 69 69.6
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 6.3e-19 99.8 69 66.7
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 8.2e-19 99.4 68 67.6
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 1.1e-18 99.0 69 66.7
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 5.0e-16 90.1 53 73.6
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.9e-13 80.5 69 62.3
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 5.7e-12 76.6 85 49.4
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 3.7e-11 73.9 64 70.3
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 2.0e-09 68.2 52 61.5
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 2.2e-08 64.7 45 68.9


User provided reference genes

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