Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0067100 Salix brachista HOM05D003540 ORTHO05D004012 1.8e-54 215.7 111 100.0
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.2e-13 80.1 93 51.6
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.4e-13 78.6 94 51.1
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 5.9e-13 77.8 94 51.1
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.0e-12 77.0 94 50.0
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 1.0e-12 77.0 94 50.0
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 1.0e-12 77.0 94 50.0
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 2.9e-12 75.5 93 49.5
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 5.0e-12 74.7 94 48.9
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 6.5e-12 74.3 91 49.5
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 8.5e-12 73.9 94 50.0
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 8.5e-12 73.9 91 52.7
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 1.1e-11 73.6 98 48.0
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 1.4e-11 73.2 93 47.3
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 3.2e-11 72.0 94 47.9
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 4.2e-11 71.6 73 50.7
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 4.2e-11 71.6 93 48.4
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 9.4e-11 70.5 91 49.5
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 9.4e-11 70.5 94 46.8
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 9.4e-11 70.5 47 74.5
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 9.4e-11 70.5 91 46.2
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 1.2e-10 70.1 89 47.2
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 2.1e-10 69.3 99 48.5
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 4.6e-10 68.2 91 45.1
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 7.9e-10 67.4 91 45.1
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 7.9e-10 67.4 93 47.3
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 1.0e-09 67.0 104 46.2
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 1.0e-09 67.0 47 68.1
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 1.0e-09 67.0 90 45.6
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 1.0e-09 67.0 91 44.0
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 1.4e-09 66.6 96 45.8
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 1.4e-09 66.6 91 46.2
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 1.4e-09 66.6 99 45.5
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 1.8e-09 66.2 47 68.1
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 1.8e-09 66.2 91 47.3
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 2.3e-09 65.9 93 44.1
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 3.0e-09 65.5 95 45.3
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 3.0e-09 65.5 95 44.2
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 3.9e-09 65.1 93 46.2
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 5.1e-09 64.7 92 43.5
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 6.7e-09 64.3 91 46.2
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 6.7e-09 64.3 91 47.3
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 6.7e-09 64.3 91 47.3
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 6.7e-09 64.3 93 46.2
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 6.7e-09 64.3 91 46.2
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 8.8e-09 63.9 88 46.6
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 8.8e-09 63.9 47 66.0
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 8.8e-09 63.9 91 42.9
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 8.8e-09 63.9 91 42.9
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 1.1e-08 63.5 95 42.1
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 1.1e-08 63.5 48 60.4
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 1.1e-08 63.5 93 44.1
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 1.1e-08 63.5 91 45.1
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 1.5e-08 63.2 85 43.5
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.5e-08 63.2 85 43.5
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.5e-08 63.2 94 42.6
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 1.9e-08 62.8 47 61.7
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.9e-08 62.8 94 41.5
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 2.5e-08 62.4 91 40.7
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 2.5e-08 62.4 83 50.6
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 2.5e-08 62.4 93 43.0
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 2.5e-08 62.4 47 59.6
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 3.3e-08 62.0 85 42.4
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 3.3e-08 62.0 91 44.0
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 3.3e-08 62.0 91 44.0
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 3.3e-08 62.0 91 44.0
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 4.3e-08 61.6 85 42.4
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 4.3e-08 61.6 91 47.3
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 5.7e-08 61.2 46 60.9
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 5.7e-08 61.2 85 42.4
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 7.4e-08 60.8 85 41.2
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 7.4e-08 60.8 85 41.2
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 7.4e-08 60.8 85 41.2
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 7.4e-08 60.8 91 44.0
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 7.4e-08 60.8 91 45.1
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 7.4e-08 60.8 85 41.2
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 9.7e-08 60.5 57 49.1
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 9.7e-08 60.5 89 44.9
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 9.7e-08 60.5 98 39.8
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 1.3e-07 60.1 85 42.4
Nitab4.5_0007681g0020 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.3e-07 60.1 86 43.0
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 1.3e-07 60.1 91 42.9
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 1.3e-07 60.1 85 41.2
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 1.7e-07 59.7 85 40.0
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 1.7e-07 59.7 85 40.0
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 1.7e-07 59.7 85 40.0
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 1.7e-07 59.7 67 47.8
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 1.7e-07 59.7 47 63.8
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 2.2e-07 59.3 95 41.1
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 2.2e-07 59.3 95 41.1
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 2.8e-07 58.9 54 51.9
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 2.8e-07 58.9 50 62.0
Ca_16024_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 2.8e-07 58.9 92 44.6
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 2.8e-07 58.9 89 38.2
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 2.8e-07 58.9 46 56.5
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 3.7e-07 58.5 54 53.7
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 3.7e-07 58.5 54 53.7
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 3.7e-07 58.5 50 62.0
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 3.7e-07 58.5 47 55.3
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 4.8e-07 58.2 85 40.0
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 4.8e-07 58.2 50 60.0
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 4.8e-07 58.2 91 44.0
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 8.2e-07 57.4 47 55.3
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 8.2e-07 57.4 94 40.4
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 8.2e-07 57.4 66 45.5
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 1.1e-06 57.0 46 54.3
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 1.1e-06 57.0 91 41.8
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.1e-06 57.0 66 45.5
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.1e-06 57.0 52 48.1
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 1.4e-06 56.6 85 40.0
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 1.4e-06 56.6 85 40.0
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 1.4e-06 56.6 85 40.0
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 1.4e-06 56.6 91 40.7
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 1.4e-06 56.6 47 55.3
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 1.8e-06 56.2 50 62.0
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 1.8e-06 56.2 92 43.5
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 2.4e-06 55.8 66 43.9
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 3.1e-06 55.5 43 62.8
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 3.1e-06 55.5 48 62.5
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 3.1e-06 55.5 50 58.0
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 3.1e-06 55.5 50 58.0
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 3.1e-06 55.5 47 53.2
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 4.1e-06 55.1 47 53.2
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 4.1e-06 55.1 66 43.9
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 4.1e-06 55.1 76 47.4
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 4.1e-06 55.1 76 47.4
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 4.1e-06 55.1 47 53.2
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 5.3e-06 54.7 91 40.7
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 5.3e-06 54.7 47 63.8
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 6.9e-06 54.3 47 53.2
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 6.9e-06 54.3 54 48.1
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 9.1e-06 53.9 91 39.6
Oeu023447.1 Olea europaea HOM05D003540 ORTHO05D004012 9.1e-06 53.9 46 63.0
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 9.1e-06 53.9 91 39.6


User provided reference genes

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