Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0055000 Salix brachista HOM05D003545 ORTHO05D004720 1.5e-68 262.7 130 100.0
Manes.01G007800 Manihot esculenta HOM05D003545 ORTHO05D004720 2.7e-41 172.2 139 68.3
Rhsim09G0038700 Rhododendron simsii HOM05D003545 ORTHO05D004720 3.5e-41 171.8 143 67.1
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 6.0e-41 171.0 144 66.7
FAN13G2420 Fragaria x ananassa HOM05D003545 ORTHO05D004720 6.0e-41 171.0 144 66.7
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 6.0e-41 171.0 144 66.7
FvH4_5g31110 Fragaria vesca HOM05D003545 ORTHO05D004720 7.8e-41 170.6 142 67.6
QL02p099802 Quercus lobata HOM05D003545 ORTHO05D004720 7.8e-41 170.6 137 67.9
Potri.004G084800 Populus trichocarpa HOM05D003545 ORTHO05D004720 1.0e-40 170.2 144 66.0
Ciclev10020270m.g Citrus clementina HOM05D003545 ORTHO05D004720 1.7e-40 169.5 139 66.9
Duzib133G1379 Durio zibethinus HOM05D003545 ORTHO05D004720 1.7e-40 169.5 144 66.0
Glyma.19G001700 Glycine max HOM05D003545 ORTHO05D004720 1.7e-40 169.5 139 66.9
Lalb_Chr24g0392661 Lupinus albus HOM05D003545 ORTHO05D004720 1.7e-40 169.5 139 66.9
RcHm_v2.0_Chr1g0328111 Rosa chinensis HOM05D003545 ORTHO05D004720 1.7e-40 169.5 142 66.9
Thecc.01G176200 Theobroma cacao HOM05D003545 ORTHO05D004720 1.7e-40 169.5 144 66.0
VMungo1080G0943 Vigna mungo HOM05D003545 ORTHO05D004720 1.7e-40 169.5 139 66.9
Atru.chr11.677 Acer truncatum HOM05D003545 ORTHO05D004720 2.3e-40 169.1 139 66.9
AT3G59990 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 2.3e-40 169.1 144 65.3
Rhsim09G0000700 Rhododendron simsii HOM05D003545 ORTHO05D004720 2.3e-40 169.1 143 66.4
GSVIVG01027489001 Vitis vinifera HOM05D003545 ORTHO05D004720 2.3e-40 169.1 144 66.0
Gohir.A11G154800 Gossypium hirsutum HOM05D003545 ORTHO05D004720 3.0e-40 168.7 144 66.0
Gohir.D11G161700 Gossypium hirsutum HOM05D003545 ORTHO05D004720 3.0e-40 168.7 144 66.0
Gorai.007G172000 Gossypium raimondii HOM05D003545 ORTHO05D004720 3.0e-40 168.7 144 66.0
COL.COLO4_20004 Corchorus olitorius HOM05D003545 ORTHO05D004720 3.9e-40 168.3 144 65.3
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 3.9e-40 168.3 144 66.0
Lj6g0020499 Lotus japonicus HOM05D003545 ORTHO05D004720 3.9e-40 168.3 139 66.2
MD17G1285400 Malus domestica HOM05D003545 ORTHO05D004720 3.9e-40 168.3 139 66.2
QL02p099813 Quercus lobata HOM05D003545 ORTHO05D004720 3.9e-40 168.3 139 66.2
Dinv14603 Davidia involucrata HOM05D003545 ORTHO05D004720 5.0e-40 167.9 139 66.2
Oeu050295.1 Olea europaea HOM05D003545 ORTHO05D004720 5.0e-40 167.9 144 64.6
Potri.017G133200 Populus trichocarpa HOM05D003545 ORTHO05D004720 5.0e-40 167.9 142 66.9
SGA_v2.0_scaffold286G47136 Striga asiatica HOM05D003545 ORTHO05D004720 5.0e-40 167.9 144 64.6
Carub.0005s2672 Capsella rubella HOM05D003545 ORTHO05D004720 6.6e-40 167.5 144 64.6
CARHR170310 Cardamine hirsuta HOM05D003545 ORTHO05D004720 6.6e-40 167.5 144 64.6
Sabra04G0056000 Salix brachista HOM05D003545 ORTHO05D004720 6.6e-40 167.5 144 65.3
SGA_v2.0_scaffold334G49082 Striga asiatica HOM05D003545 ORTHO05D004720 6.6e-40 167.5 142 65.5
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 8.6e-40 167.2 144 64.6
Nitab4.5_0002417g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 8.6e-40 167.2 138 66.7
arahy.Tifrunner.gnm1.ann1.J1JEGY Arachis hypogaea HOM05D003545 ORTHO05D004720 1.1e-39 166.8 139 65.5
arahy.Tifrunner.gnm1.ann1.UV5XRQ Arachis hypogaea HOM05D003545 ORTHO05D004720 1.1e-39 166.8 139 65.5
CiPaw.05G050600 Carya illinoinensis HOM05D003545 ORTHO05D004720 1.1e-39 166.8 139 65.5
Cc03_g16230 Coffea canephora HOM05D003545 ORTHO05D004720 1.1e-39 166.8 144 64.6
Migut.N01930 Erythranthe guttata HOM05D003545 ORTHO05D004720 1.1e-39 166.8 144 64.6
Thhalv10005983m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 1.1e-39 166.8 144 64.6
Nn1g09395 Nelumbo nucifera HOM05D003545 ORTHO05D004720 1.1e-39 166.8 144 64.6
DCAR_005465 Daucus carota HOM05D003545 ORTHO05D004720 1.5e-39 166.4 144 63.9
Eucgr.H00238 Eucalyptus grandis HOM05D003545 ORTHO05D004720 1.5e-39 166.4 144 64.6
PSO063G3599 Papaver somniferum HOM05D003545 ORTHO05D004720 1.5e-39 166.4 139 64.7
PSO782G1687 Papaver somniferum HOM05D003545 ORTHO05D004720 1.5e-39 166.4 139 64.7
TAR636G2827 Trochodendron aralioides HOM05D003545 ORTHO05D004720 1.5e-39 166.4 139 65.5
Actinidia29355 Actinidia chinensis HOM05D003545 ORTHO05D004720 1.9e-39 166.0 139 64.7
Aa31LG1G25840 Aethionema arabicum HOM05D003545 ORTHO05D004720 1.9e-39 166.0 136 64.7
AL5G42170 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 1.9e-39 166.0 144 64.6
CSS0015354 Camellia sinensis var. sinensis HOM05D003545 ORTHO05D004720 1.9e-39 166.0 144 65.3
Prupe.2G330300 Prunus persica HOM05D003545 ORTHO05D004720 1.9e-39 166.0 139 64.7
Solyc01g006800.4 Solanum lycopersicum HOM05D003545 ORTHO05D004720 1.9e-39 166.0 139 65.5
Sopen01g002780 Solanum pennellii HOM05D003545 ORTHO05D004720 1.9e-39 166.0 139 65.5
PGSC0003DMG400021374 Solanum tuberosum HOM05D003545 ORTHO05D004720 1.9e-39 166.0 139 65.5
THA.LOC104804455 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 1.9e-39 166.0 139 64.0
Duzib138G0328 Durio zibethinus HOM05D003545 ORTHO05D004720 2.5e-39 165.6 144 64.6
MBI03_g28950_MAGBIO Magnolia biondii HOM05D003545 ORTHO05D004720 2.5e-39 165.6 139 65.5
CDE07G0638 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 3.3e-39 165.2 144 63.2
MELO3C020334.2 Cucumis melo HOM05D003545 ORTHO05D004720 3.3e-39 165.2 139 64.0
MELO3C032013.2 Cucumis melo HOM05D003545 ORTHO05D004720 3.3e-39 165.2 139 64.0
CsaV3_3G017890 Cucumis sativus L. HOM05D003545 ORTHO05D004720 3.3e-39 165.2 139 64.0
Hund22664 Selenicereus undatus HOM05D003545 ORTHO05D004720 3.3e-39 165.2 139 64.7
A03p24710 Brassica napus HOM05D003545 ORTHO05D004720 4.3e-39 164.9 137 64.2
BraA03t11677Z Brassica rapa HOM05D003545 ORTHO05D004720 4.3e-39 164.9 137 64.2
Carub.0004s2675 Capsella rubella HOM05D003545 ORTHO05D004720 4.3e-39 164.9 137 64.2
CARHR139340 Cardamine hirsuta HOM05D003545 ORTHO05D004720 4.3e-39 164.9 137 64.2
Nitab4.5_0011686g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 4.3e-39 164.9 139 64.7
PGR042G1967 Punica granatum HOM05D003545 ORTHO05D004720 4.3e-39 164.9 144 63.9
Sp5g03190 Schrenkiella parvula HOM05D003545 ORTHO05D004720 4.3e-39 164.9 144 63.9
Medtr4g109100 Medicago truncatula HOM05D003545 ORTHO05D004720 5.6e-39 164.5 139 64.0
Sc10g0003580 Simmondsia chinensis HOM05D003545 ORTHO05D004720 5.6e-39 164.5 139 64.0
TPR.G21147 Trifolium pratense HOM05D003545 ORTHO05D004720 5.6e-39 164.5 139 64.0
Cpa.g.sc9.232 Carica papaya HOM05D003545 ORTHO05D004720 7.3e-39 164.1 137 64.2
Cc03_g16260 Coffea canephora HOM05D003545 ORTHO05D004720 7.3e-39 164.1 142 64.8
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 9.5e-39 163.7 137 63.5
AT2G44180 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 9.5e-39 163.7 137 63.5
BcaC01g05183 Brassica carinata HOM05D003545 ORTHO05D004720 9.5e-39 163.7 137 63.5
C03p29450 Brassica napus HOM05D003545 ORTHO05D004720 9.5e-39 163.7 137 63.5
BolC3t15293H Brassica oleracea HOM05D003545 ORTHO05D004720 9.5e-39 163.7 137 63.5
HanXRQChr12g0379661 Helianthus annuus HOM05D003545 ORTHO05D004720 9.5e-39 163.7 144 61.8
Lsat_1_v5_gn_5_37781 Lactuca sativa HOM05D003545 ORTHO05D004720 9.5e-39 163.7 143 62.2
BcaC07g40404 Brassica carinata HOM05D003545 ORTHO05D004720 1.2e-38 163.3 144 63.2
A04p01940 Brassica napus HOM05D003545 ORTHO05D004720 1.2e-38 163.3 144 62.5
A09p52330 Brassica napus HOM05D003545 ORTHO05D004720 1.2e-38 163.3 144 63.2
C08p34990 Brassica napus HOM05D003545 ORTHO05D004720 1.2e-38 163.3 144 63.2
BolC8t51103H Brassica oleracea HOM05D003545 ORTHO05D004720 1.2e-38 163.3 139 64.0
BraA04t15918Z Brassica rapa HOM05D003545 ORTHO05D004720 1.2e-38 163.3 144 62.5
BraA09t40662Z Brassica rapa HOM05D003545 ORTHO05D004720 1.2e-38 163.3 144 63.2
CAN.G911.7 Capsicum annuum HOM05D003545 ORTHO05D004720 1.2e-38 163.3 139 64.7
TWI75G0601 Tripterygium wilfordii HOM05D003545 ORTHO05D004720 1.2e-38 163.3 139 63.3
MSTRG.24538 Avicennia marina HOM05D003545 ORTHO05D004720 1.6e-38 162.9 144 63.2
ECA246G2273 Erigeron canadensis HOM05D003545 ORTHO05D004720 1.6e-38 162.9 144 61.1
Eucgr.E00006 Eucalyptus grandis HOM05D003545 ORTHO05D004720 1.6e-38 162.9 132 69.7
Peaxi162Scf00184g00109 Petunia axillaris HOM05D003545 ORTHO05D004720 1.6e-38 162.9 136 65.4
Psat6g212640 Pisum sativum HOM05D003545 ORTHO05D004720 1.6e-38 162.9 144 62.5
Medtr1g105940 Medicago truncatula HOM05D003545 ORTHO05D004720 2.8e-38 162.2 139 63.3
SMO340G0246 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 2.8e-38 162.2 144 62.5
THA.LOC104802530 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 2.8e-38 162.2 139 64.0
EL10Ac3g06198 Beta vulgaris HOM05D003545 ORTHO05D004720 3.6e-38 161.8 139 63.3
BcaC07g40535 Brassica carinata HOM05D003545 ORTHO05D004720 3.6e-38 161.8 144 62.5
CANSAT64G0507 Cannabis sativa HOM05D003545 ORTHO05D004720 3.6e-38 161.8 144 63.2
AUR62002514 Chenopodium quinoa HOM05D003545 ORTHO05D004720 3.6e-38 161.8 138 63.0
Thhalv10001459m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 3.6e-38 161.8 137 62.8
Sed0004430 Sechium edule HOM05D003545 ORTHO05D004720 3.6e-38 161.8 139 63.3
MSTRG.22061 Avicennia marina HOM05D003545 ORTHO05D004720 4.7e-38 161.4 137 63.5
unitig_747.g21724 Utricularia gibba HOM05D003545 ORTHO05D004720 4.7e-38 161.4 144 63.2
Aqoxy5G02074 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 6.2e-38 161.0 137 64.2
SEGI_07894 Sequoiadendron giganteum HOM05D003545 ORTHO05D004720 6.2e-38 161.0 144 62.5
BcaB02g07435 Brassica carinata HOM05D003545 ORTHO05D004720 8.0e-38 160.6 144 61.8
BcaC08g45018 Brassica carinata HOM05D003545 ORTHO05D004720 8.0e-38 160.6 144 61.8
A07p24930 Brassica napus HOM05D003545 ORTHO05D004720 8.0e-38 160.6 144 61.8
C06p26500 Brassica napus HOM05D003545 ORTHO05D004720 8.0e-38 160.6 144 61.8
BolC6t37813H Brassica oleracea HOM05D003545 ORTHO05D004720 8.0e-38 160.6 144 61.8
ClCG05G010600 Citrullus lanatus HOM05D003545 ORTHO05D004720 8.0e-38 160.6 139 62.6
AagrBONN_evm.TU.Sc2ySwM_362.208 Anthoceros agrestis HOM05D003545 ORTHO05D004720 1.1e-37 160.2 144 61.8
BcaB02g08203 Brassica carinata HOM05D003545 ORTHO05D004720 1.1e-37 160.2 144 62.5
Eucgr.E04344 Eucalyptus grandis HOM05D003545 ORTHO05D004720 1.1e-37 160.2 137 65.0
Aqoxy5G02072 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 1.4e-37 159.8 144 61.1
AUR62023680 Chenopodium quinoa HOM05D003545 ORTHO05D004720 1.4e-37 159.8 139 62.6
Sp4g26260 Schrenkiella parvula HOM05D003545 ORTHO05D004720 1.4e-37 159.8 137 61.3
SMO230G0032 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 1.4e-37 159.8 136 64.0
HPP92_003411 Vanilla planifolia HOM05D003545 ORTHO05D004720 2.3e-37 159.1 144 61.8
SMO336G0027 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 3.1e-37 158.7 136 64.7
Sed0011009 Sechium edule HOM05D003545 ORTHO05D004720 4.0e-37 158.3 139 61.9
ATR0594G119 Amborella trichopoda HOM05D003545 ORTHO05D004720 6.8e-37 157.5 144 59.0
Pp3c18_2370 Physcomitrium patens HOM05D003545 ORTHO05D004720 8.9e-37 157.1 144 59.7
Pp3c18_2250 Physcomitrium patens HOM05D003545 ORTHO05D004720 1.2e-36 156.8 142 60.6
vmacro00738 Vaccinium macrocarpon HOM05D003545 ORTHO05D004720 1.2e-36 156.8 100 80.0
Lj1A1040G36 Lonicera japonica HOM05D003545 ORTHO05D004720 1.5e-36 156.4 102 77.5
Zm00001eb173260 Zea mays HOM05D003545 ORTHO05D004720 2.0e-36 156.0 144 60.4
AL4G43130 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 2.6e-36 155.6 137 60.6
Ca_11016_v3 Cicer arietinum L. HOM05D003545 ORTHO05D004720 3.4e-36 155.2 137 61.3
SMO367G0222 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 5.8e-36 154.5 137 62.0
CDE04G0368 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 7.5e-36 154.1 102 75.5
Mapoly0009s0058 Marchantia polymorpha HOM05D003545 ORTHO05D004720 7.5e-36 154.1 144 59.0
Os12g0628500 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 1.3e-35 153.3 139 60.4
Os08g0542000 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 1.7e-35 152.9 142 59.9
CBR_g52643 Chara braunii HOM05D003545 ORTHO05D004720 2.2e-35 152.5 144 57.6
Cre16.g652100 Chlamydomonas reinhardtii HOM05D003545 ORTHO05D004720 6.4e-35 151.0 144 57.6
Glyma.05G001900 Glycine max HOM05D003545 ORTHO05D004720 6.4e-35 151.0 130 64.6
PRCOL_00002364 Prasinoderma coloniale HOM05D003545 ORTHO05D004720 1.4e-34 149.8 139 59.0
Sabra17G0110100 Salix brachista HOM05D003545 ORTHO05D004720 1.9e-34 149.4 91 85.7
Mapoly0009s0208 Marchantia polymorpha HOM05D003545 ORTHO05D004720 5.4e-34 147.9 138 60.1
MCO01G510 Micromonas commoda HOM05D003545 ORTHO05D004720 2.1e-33 146.0 139 54.7
BcaC02g10099 Brassica carinata HOM05D003545 ORTHO05D004720 1.1e-31 140.2 126 59.5
BolC4t24842H Brassica oleracea HOM05D003545 ORTHO05D004720 1.1e-31 140.2 126 59.5
C04p32790 Brassica napus HOM05D003545 ORTHO05D004720 2.1e-30 136.0 126 57.9
Haze_01811 Corylus avellana HOM05D003545 ORTHO05D004720 1.3e-27 126.7 115 60.9
BcaC08g45078 Brassica carinata HOM05D003545 ORTHO05D004720 6.4e-27 124.4 132 54.5
C06p26870 Brassica napus HOM05D003545 ORTHO05D004720 6.4e-27 124.4 132 54.5
BolC6t37861H Brassica oleracea HOM05D003545 ORTHO05D004720 6.4e-27 124.4 132 54.5
Haze_26740 Corylus avellana HOM05D003545 ORTHO05D004720 2.1e-25 119.4 142 46.5
RcHm_v2.0_Chr1g0328131 Rosa chinensis HOM05D003545 ORTHO05D004720 1.5e-23 113.2 61 88.5
BcaB01g03326 Brassica carinata HOM05D003545 ORTHO05D004720 2.1e-22 109.4 59 84.7
BraA07t30135Z Brassica rapa HOM05D003545 ORTHO05D004720 9.2e-18 94.0 104 54.8
SGA_v2.0_scaffold286G47134 Striga asiatica HOM05D003545 ORTHO05D004720 5.6e-07 58.2 49 51.0


User provided reference genes

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