Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 3.7e-215 751.5 448 100.0
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.6e-197 692.2 448 88.6
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.6e-192 675.6 449 91.3
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 3.7e-191 671.8 448 83.5
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 8.6e-164 580.9 449 76.8
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 4.0e-161 572.0 449 75.1
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 3.0e-156 555.8 449 78.2
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 5.6e-147 525.0 450 72.9
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 8.1e-146 521.2 454 74.9
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.4e-145 520.4 450 68.9
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.0e-136 490.0 451 70.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 2.2e-135 486.5 451 71.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.1e-134 484.2 457 64.8
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.9e-134 483.4 451 71.4
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 9.3e-134 481.1 456 67.1
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.2e-133 480.7 451 67.0
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.0e-132 477.6 456 70.0
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.7e-132 476.9 453 64.5
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.3e-130 470.7 453 66.7
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 6.2e-130 468.4 452 67.7
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 2.6e-128 463.0 461 60.7
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.5e-128 462.2 453 69.1
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.9e-127 459.5 447 65.3
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 2.4e-126 456.4 460 59.8
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 2.4e-126 456.4 460 59.8
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.4e-126 456.4 451 69.6
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 5.4e-126 455.3 452 66.6
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 2.7e-125 453.0 454 66.5
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.3e-124 450.7 470 62.3
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.3e-124 449.9 453 65.6
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 3.9e-124 449.1 454 65.0
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 5.1e-124 448.7 430 66.5
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 6.7e-124 448.4 430 69.8
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 6.7e-124 448.4 455 63.5
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 5.3e-121 438.7 465 64.9
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 5.3e-121 438.7 468 58.5
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 6.4e-119 431.8 454 61.9
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 9.3e-118 427.9 451 64.3
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.7e-117 426.4 450 67.3
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 2.7e-117 426.4 455 65.1
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 4.6e-117 425.6 428 55.1
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 6.0e-117 425.2 455 58.7
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.3e-116 424.1 450 67.1
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 2.3e-116 423.3 463 61.3
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.0e-116 422.9 455 64.6
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 3.3e-115 419.5 458 62.9
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 7.4e-115 418.3 452 64.2
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.3e-114 417.5 455 63.1
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.1e-114 416.8 455 63.1
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.1e-113 414.5 454 58.1
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 1.0e-111 407.9 455 61.8
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.3e-111 407.5 445 63.4
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.2e-111 406.8 417 63.8
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.4e-111 404.8 450 63.6
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.4e-111 404.8 450 63.6
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.2e-110 402.9 455 61.1
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 7.1e-110 401.7 445 64.3
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 6.0e-109 398.7 451 62.1
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.9e-107 393.7 427 67.7
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 4.8e-106 389.0 450 50.2
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.2e-101 374.4 454 60.6
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.1e-97 359.8 450 58.7
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 6.9e-97 358.6 463 55.7
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 2.6e-96 356.7 384 64.3
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.3e-90 337.8 453 55.6
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 7.2e-86 322.0 458 44.5
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.6e-85 320.9 450 47.8
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.1e-83 314.7 450 51.8
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.3e-83 313.2 451 53.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.6e-80 303.5 427 54.6
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 6.5e-79 298.9 232 64.2
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 9.4e-78 295.0 465 53.5
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 2.7e-77 293.5 449 41.6
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 5.2e-76 289.3 444 43.7
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.4e-68 264.6 372 59.1
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 8.3e-66 255.4 469 48.8
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.1e-62 245.0 447 45.4
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 2.3e-55 220.7 460 50.9
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 4.0e-52 209.9 156 64.7
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 4.0e-52 209.9 156 64.7
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 9.2e-49 198.7 473 40.8
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 8.3e-42 175.6 292 38.4
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 9.2e-41 172.2 279 40.9
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.1e-40 171.0 277 40.1
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 4.6e-40 169.9 282 37.9
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 7.8e-40 169.1 377 50.7
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.0e-39 168.7 276 39.5
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.0e-39 168.7 276 39.5
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 1.3e-39 168.3 469 34.1
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.7e-39 167.9 284 38.7
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 6.6e-39 166.0 128 59.4
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.1e-38 165.2 291 36.4
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.1e-38 165.2 291 36.4
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.5e-38 164.9 284 40.5
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.9e-38 164.5 276 38.8
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.5e-38 164.1 271 41.0
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 7.3e-38 162.5 284 39.4
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 2.1e-37 161.0 271 37.3
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 2.1e-37 161.0 287 39.0
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 3.6e-37 160.2 276 38.0
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 3.6e-37 160.2 448 39.3
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 3.6e-37 160.2 282 37.2
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 3.6e-37 160.2 294 38.1
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.7e-37 159.8 145 51.0
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 6.2e-37 159.5 206 42.2
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 8.1e-37 159.1 284 38.4
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 1.1e-36 158.7 167 47.3
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.1e-36 158.7 278 36.3
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-36 158.7 288 37.8
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.4e-36 158.3 272 39.7
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 1.4e-36 158.3 276 37.0
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.8e-36 157.9 279 37.6
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.8e-36 157.9 298 37.9
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.3e-36 157.5 319 36.1
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 2.3e-36 157.5 282 38.7
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.3e-36 157.5 158 50.6
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 3.1e-36 157.1 276 37.0
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.0e-36 156.8 283 38.2
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 4.0e-36 156.8 149 49.0
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 4.0e-36 156.8 130 54.6
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 6.8e-36 156.0 140 54.3
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 6.8e-36 156.0 140 54.3
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 8.9e-36 155.6 283 38.2
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.2e-35 155.2 222 43.2
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.5e-35 154.8 287 37.3
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.5e-35 154.8 287 35.9
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.0e-35 154.5 156 48.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 2.6e-35 154.1 277 36.1
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 7.6e-35 152.5 192 43.2
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 7.6e-35 152.5 264 36.4
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 9.9e-35 152.1 130 55.4
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.7e-34 151.4 282 37.6
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.7e-34 151.4 130 53.1
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.2e-34 151.0 130 51.5
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.2e-34 151.0 130 51.5
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.2e-34 151.0 283 36.0
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 2.2e-34 151.0 128 53.1
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.2e-34 151.0 128 53.9
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 2.9e-34 150.6 449 43.2
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 4.9e-34 149.8 277 36.5
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 6.4e-34 149.4 284 35.2
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.1e-33 148.7 128 51.6
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.9e-33 147.9 291 36.4
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.4e-33 147.5 167 44.9
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 5.4e-33 146.4 273 38.8
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 7.1e-33 146.0 130 50.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 9.2e-33 145.6 278 36.0
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.6e-32 144.8 280 37.5
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 2.7e-32 144.1 129 49.6
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 3.5e-32 143.7 280 36.4
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 4.6e-32 143.3 280 36.4
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.3e-31 141.7 299 35.8
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.7e-31 141.4 296 33.8
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 3.9e-31 140.2 140 55.0
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.3e-30 137.1 312 34.6
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 2.8e-29 134.0 229 36.7
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 2.8e-29 134.0 229 36.7
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 7.6e-27 125.9 78 78.2
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.3e-07 62.0 61 49.2
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 3.9e-07 60.5 81 46.9


User provided reference genes

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