Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.4e-87 325.5 168 100.0
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 7.1e-87 323.9 168 99.4
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 1.1e-47 193.7 141 78.0
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 1.8e-45 186.4 141 72.3
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 1.1e-44 183.7 115 79.1
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.0e-44 183.0 114 79.8
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 5.7e-44 181.4 115 77.4
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 2.2e-43 179.5 115 75.7
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 2.8e-43 179.1 114 78.1
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.7e-43 178.7 115 75.7
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.7e-43 178.7 115 75.7
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.7e-43 178.7 115 75.7
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 6.3e-43 177.9 115 76.5
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 6.3e-43 177.9 115 77.4
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 8.2e-43 177.6 115 75.7
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 1.8e-42 176.4 118 74.6
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 2.4e-42 176.0 115 75.7
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 4.1e-42 175.3 118 74.6
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 4.1e-42 175.3 123 74.8
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 4.1e-42 175.3 115 74.8
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 4.1e-42 175.3 113 77.0
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 4.1e-42 175.3 115 75.7
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.3e-42 174.9 115 74.8
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 5.3e-42 174.9 113 77.0
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 5.3e-42 174.9 113 77.0
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 7.0e-42 174.5 117 75.2
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 9.1e-42 174.1 112 75.0
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 9.1e-42 174.1 115 74.8
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 9.1e-42 174.1 113 76.1
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.6e-41 173.3 115 74.8
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.6e-41 173.3 118 74.6
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 1.6e-41 173.3 113 74.3
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.6e-41 173.3 115 73.9
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.6e-41 173.3 116 75.9
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.6e-41 172.6 115 74.8
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 3.5e-41 172.2 114 75.4
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 3.5e-41 172.2 113 73.5
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 5.9e-41 171.4 114 72.8
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 7.7e-41 171.0 113 76.1
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.7e-41 171.0 115 73.9
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.7e-41 171.0 115 73.9
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.7e-41 171.0 115 73.9
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.3e-40 170.2 113 73.5
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.3e-40 170.2 113 74.3
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 2.2e-40 169.5 115 74.8
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.2e-40 169.5 113 73.5
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 2.9e-40 169.1 116 75.9
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 2.9e-40 169.1 115 75.7
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 2.9e-40 169.1 113 73.5
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 2.9e-40 169.1 113 74.3
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.9e-40 169.1 113 74.3
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 2.9e-40 169.1 113 75.2
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 3.8e-40 168.7 113 73.5
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 3.8e-40 168.7 115 72.2
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 3.8e-40 168.7 113 71.7
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 8.5e-40 167.5 115 73.0
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 8.5e-40 167.5 113 74.3
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-39 167.2 114 72.8
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 1.1e-39 167.2 113 73.5
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 1.1e-39 167.2 115 72.2
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 5.5e-39 164.9 116 69.8
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 7.2e-39 164.5 113 73.5
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 7.2e-39 164.5 116 68.1
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 7.2e-39 164.5 113 70.8
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 9.4e-39 164.1 141 61.7
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 9.4e-39 164.1 115 73.9
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 1.6e-38 163.3 113 69.9
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 2.1e-38 162.9 115 74.8
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.1e-38 162.9 113 68.1
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 6.1e-38 161.4 115 72.2
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 8.0e-38 161.0 113 66.4
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 1.4e-37 160.2 107 74.8
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 1.4e-37 160.2 107 74.8
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.8e-37 159.8 133 64.7
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 2.3e-37 159.5 113 72.6
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 4.0e-37 158.7 113 73.5
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 4.0e-37 158.7 110 75.5
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 5.2e-37 158.3 115 70.4
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 6.7e-37 157.9 113 69.9
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 8.8e-37 157.5 133 63.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 2.0e-36 156.4 115 67.8
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.6e-36 156.0 114 73.7
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.4e-36 155.2 113 72.6
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 9.7e-36 154.1 115 68.7
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.3e-35 153.7 113 67.3
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 2.2e-35 152.9 134 57.5
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.7e-35 152.1 113 67.3
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 3.7e-35 152.1 115 65.2
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 4.8e-35 151.8 115 65.2
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 4.8e-35 151.8 110 70.9
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 4.8e-35 151.8 116 65.5
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 6.3e-35 151.4 115 65.2
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.8e-34 149.8 113 65.5
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.8e-34 149.8 115 64.3
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 1.8e-34 149.8 115 64.3
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.8e-34 149.8 135 61.5
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 3.1e-34 149.1 113 65.5
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 3.1e-34 149.1 114 64.9
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 4.1e-34 148.7 115 64.3
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 5.3e-34 148.3 112 65.2
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 7.0e-34 147.9 112 64.3
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 7.0e-34 147.9 112 64.3
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 7.0e-34 147.9 116 62.1
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.2e-33 147.1 112 64.3
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.2e-33 147.1 115 63.5
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.2e-33 147.1 113 64.6
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.6e-33 146.7 115 63.5
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.6e-33 146.7 113 69.0
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.0e-33 146.4 159 55.3
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.7e-33 146.0 139 56.1
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 2.9e-32 142.5 119 63.0
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 5.0e-32 141.7 113 61.9
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 8.8e-29 131.0 88 72.7
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 4.1e-26 122.1 112 56.2
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 9.1e-26 120.9 115 60.0
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 6.5e-24 114.8 90 64.4
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.1e-23 114.0 76 76.3
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.1e-23 114.0 75 74.7
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.1e-23 114.0 110 50.9
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.9e-23 113.2 85 67.1
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 1.9e-23 113.2 76 75.0
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 4.2e-23 112.1 75 72.0
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.5e-23 111.7 75 73.3
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 3.6e-22 109.0 108 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 1.8e-21 106.7 106 54.7
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 4.0e-21 105.5 89 67.4
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 9.8e-20 100.9 115 50.4
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.9e-19 98.6 76 65.8
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 4.9e-19 98.6 76 65.8
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.4e-18 97.1 76 64.5
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 3.1e-18 95.9 76 67.1
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 7.0e-18 94.7 79 59.5
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-17 91.7 115 47.8
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 2.9e-16 89.4 79 62.0
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 1.1e-15 87.4 79 55.7
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 2.9e-11 72.8 52 69.2
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 2.9e-11 72.8 134 39.6
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 3.5e-09 65.9 75 49.3


User provided reference genes

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