Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0045400 Salix brachista HOM05D001993 ORTHO05D009037 1.2e-221 773.1 468 100.0
Sabra17G0040600 Salix brachista HOM05D001993 ORTHO05D009037 1.4e-220 769.6 468 99.4
Potri.017G053400 Populus trichocarpa HOM05D001993 ORTHO05D009037 2.7e-216 755.4 468 92.5
Manes.11G063100 Manihot esculenta HOM05D001993 ORTHO05D009037 1.8e-196 689.5 468 85.7
Thecc.01G153800 Theobroma cacao HOM05D001993 ORTHO05D009037 1.8e-196 689.5 468 78.8
COL.COLO4_33613 Corchorus olitorius HOM05D001993 ORTHO05D009037 4.0e-196 688.3 468 82.9
Atru.chr13.159 Acer truncatum HOM05D001993 ORTHO05D009037 7.0e-193 677.6 468 82.9
Cpa.g.sc10.126 Carica papaya HOM05D001993 ORTHO05D009037 9.2e-193 677.2 468 79.7
Gorai.004G256300 Gossypium raimondii HOM05D001993 ORTHO05D009037 7.8e-192 674.1 468 77.6
Gohir.D08G240900 Gossypium hirsutum HOM05D001993 ORTHO05D009037 1.0e-191 673.7 468 80.1
CSS0028818 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D009037 1.3e-191 673.3 468 83.8
MD17G1219000 Malus domestica HOM05D001993 ORTHO05D009037 2.3e-191 672.5 468 80.3
RcHm_v2.0_Chr2g0133701 Rosa chinensis HOM05D001993 ORTHO05D009037 3.9e-191 671.8 468 82.9
CiPaw.01G251700 Carya illinoinensis HOM05D001993 ORTHO05D009037 5.6e-190 667.9 468 82.5
Prupe.3G094500 Prunus persica HOM05D001993 ORTHO05D009037 3.6e-189 665.2 468 82.7
Gohir.A08G221654 Gossypium hirsutum HOM05D001993 ORTHO05D009037 1.1e-188 663.7 466 77.5
Haze_16628 Corylus avellana HOM05D001993 ORTHO05D009037 8.9e-188 660.6 468 81.4
Oeu010088.1 Olea europaea HOM05D001993 ORTHO05D009037 2.0e-187 659.4 468 80.1
Haze_16631 Corylus avellana HOM05D001993 ORTHO05D009037 2.2e-186 656.0 468 81.0
Cfa001914 Carpinus fangiana HOM05D001993 ORTHO05D009037 2.9e-186 655.6 468 81.2
Ciclev10025548m.g Citrus clementina HOM05D001993 ORTHO05D009037 3.2e-185 652.1 468 81.0
CsaV3_7G032050 Cucumis sativus L. HOM05D001993 ORTHO05D009037 9.2e-185 650.6 468 79.1
FvH4_6g29021 Fragaria vesca HOM05D001993 ORTHO05D009037 2.1e-184 649.4 468 80.1
FAN09G0213 Fragaria x ananassa HOM05D001993 ORTHO05D009037 2.7e-184 649.0 468 80.1
Rhsim12G0188800 Rhododendron simsii HOM05D001993 ORTHO05D009037 1.0e-183 647.1 466 75.8
Lj3g0005746 Lotus japonicus HOM05D001993 ORTHO05D009037 3.0e-183 645.6 468 80.1
vmacro16868 Vaccinium macrocarpon HOM05D001993 ORTHO05D009037 3.0e-183 645.6 468 79.1
Nitab4.5_0000233g0190 Nicotiana tabacum HOM05D001993 ORTHO05D009037 3.9e-183 645.2 468 74.8
Duzib147G1049 Durio zibethinus HOM05D001993 ORTHO05D009037 6.6e-183 644.4 468 75.6
FAN05G0323 Fragaria x ananassa HOM05D001993 ORTHO05D009037 6.6e-183 644.4 468 79.7
MSTRG.22779 Avicennia marina HOM05D001993 ORTHO05D009037 1.9e-182 642.9 468 79.1
Lalb_Chr14g0373981 Lupinus albus HOM05D001993 ORTHO05D009037 3.3e-182 642.1 468 79.3
CANSAT56G0483 Cannabis sativa HOM05D001993 ORTHO05D009037 7.3e-182 641.0 468 77.1
Sed0024162 Sechium edule HOM05D001993 ORTHO05D009037 1.6e-181 639.8 468 74.4
TAR625G0584 Trochodendron aralioides HOM05D001993 ORTHO05D009037 2.1e-181 639.4 468 78.2
MELO3C023452.2 Cucumis melo HOM05D001993 ORTHO05D009037 6.2e-181 637.9 468 78.0
Hma1.2p1_0109F.1_g052250 Hydrangea macrophylla HOM05D001993 ORTHO05D009037 1.8e-180 636.3 468 83.1
ClCG09G003170 Citrullus lanatus HOM05D001993 ORTHO05D009037 6.8e-180 634.4 468 78.2
TPR.G8903 Trifolium pratense HOM05D001993 ORTHO05D009037 8.9e-180 634.0 468 78.8
Peaxi162Scf00108g00131 Petunia axillaris HOM05D001993 ORTHO05D009037 1.2e-179 633.6 468 73.7
Eucgr.J03091 Eucalyptus grandis HOM05D001993 ORTHO05D009037 1.5e-179 633.3 468 78.4
TWI12G1056 Tripterygium wilfordii HOM05D001993 ORTHO05D009037 1.5e-179 633.3 468 79.1
VMungo1080G1544 Vigna mungo HOM05D001993 ORTHO05D009037 1.5e-179 633.3 468 78.8
Phvul.005G181200 Phaseolus vulgaris HOM05D001993 ORTHO05D009037 2.0e-179 632.9 468 78.8
Glyma.15G004900 Glycine max HOM05D001993 ORTHO05D009037 2.6e-179 632.5 468 79.1
Sopen09g006100 Solanum pennellii HOM05D001993 ORTHO05D009037 7.6e-179 630.9 468 74.1
TPR.G19157 Trifolium pratense HOM05D001993 ORTHO05D009037 7.6e-179 630.9 468 76.5
Ca_01029_v3 Cicer arietinum L. HOM05D001993 ORTHO05D009037 1.7e-178 629.8 468 79.1
Psat5g303960 Pisum sativum HOM05D001993 ORTHO05D009037 2.2e-178 629.4 468 73.9
PGSC0003DMG400024263 Solanum tuberosum HOM05D001993 ORTHO05D009037 1.1e-177 627.1 468 73.7
Medtr2g104760 Medicago truncatula HOM05D001993 ORTHO05D009037 3.2e-177 625.5 468 77.8
Migut.I00727 Erythranthe guttata HOM05D001993 ORTHO05D009037 1.6e-176 623.2 468 73.3
CAN.G697.13 Capsicum annuum HOM05D001993 ORTHO05D009037 2.1e-176 622.9 468 73.1
Nn8g39702 Nelumbo nucifera HOM05D001993 ORTHO05D009037 2.1e-176 622.9 468 76.9
Solyc09g011370.3 Solanum lycopersicum HOM05D001993 ORTHO05D009037 2.7e-176 622.5 468 72.6
Lj5C77T4 Lonicera japonica HOM05D001993 ORTHO05D009037 4.6e-176 621.7 468 77.4
QL05p033907 Quercus lobata HOM05D001993 ORTHO05D009037 5.1e-175 618.2 492 75.6
ATR0767G064 Amborella trichopoda HOM05D001993 ORTHO05D009037 1.5e-174 616.7 468 75.0
Glyma.13G368900 Glycine max HOM05D001993 ORTHO05D009037 1.6e-173 613.2 395 75.2
PGR031G2325 Punica granatum HOM05D001993 ORTHO05D009037 1.1e-172 610.5 468 76.9
GSVIVG01017521001 Vitis vinifera HOM05D001993 ORTHO05D009037 1.7e-170 603.2 468 75.2
SalBow7G0151 Salvia bowleyana HOM05D001993 ORTHO05D009037 2.9e-170 602.4 469 74.6
Cc04_g04800 Coffea canephora HOM05D001993 ORTHO05D009037 2.4e-169 599.4 467 75.2
Aa31LG4G850 Aethionema arabicum HOM05D001993 ORTHO05D009037 3.5e-168 595.5 468 71.6
Aqoxy7G03544 Aquilegia oxysepala HOM05D001993 ORTHO05D009037 3.0e-167 592.4 470 73.2
Nitab4.5_0005460g0010 Nicotiana tabacum HOM05D001993 ORTHO05D009037 1.1e-166 590.5 468 70.1
Actinidia30712 Actinidia chinensis HOM05D001993 ORTHO05D009037 2.5e-166 589.3 418 81.3
ECA246G3767 Erigeron canadensis HOM05D001993 ORTHO05D009037 5.6e-166 588.2 468 67.7
Lsat_1_v5_gn_5_7881 Lactuca sativa HOM05D001993 ORTHO05D009037 3.6e-165 585.5 468 69.9
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 1.1e-164 583.9 468 66.2
AT1G80570 Arabidopsis thaliana HOM05D001993 ORTHO05D009037 4.0e-164 582.0 468 70.7
Ah.01g006660 Amaranthus hybridus HOM05D001993 ORTHO05D009037 4.5e-163 578.6 468 72.0
THA.LOC104808190 Tarenaya hassleriana HOM05D001993 ORTHO05D009037 4.5e-163 578.6 396 70.5
arahy.Tifrunner.gnm1.ann1.8N7B8R Arachis hypogaea HOM05D001993 ORTHO05D009037 2.3e-159 566.2 466 71.5
BcaC03g15951 Brassica carinata HOM05D001993 ORTHO05D009037 1.1e-158 563.9 468 70.1
SEGI_33239 Sequoiadendron giganteum HOM05D001993 ORTHO05D009037 1.9e-158 563.1 468 68.4
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 2.8e-157 559.3 468 69.7
AUR62016603 Chenopodium quinoa HOM05D001993 ORTHO05D009037 1.8e-156 556.6 468 70.9
CDE05G1651 Ceratophyllum demersum HOM05D001993 ORTHO05D009037 9.0e-156 554.3 468 69.0
AUR62011454 Chenopodium quinoa HOM05D001993 ORTHO05D009037 7.6e-155 551.2 468 70.1
unitig_0.g1110 Utricularia gibba HOM05D001993 ORTHO05D009037 7.6e-155 551.2 466 68.9
Carub.0002s2697 Capsella rubella HOM05D001993 ORTHO05D009037 2.2e-154 549.7 468 65.0
AL2G40860 Arabidopsis lyrata HOM05D001993 ORTHO05D009037 5.5e-153 545.0 468 62.2
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 6.0e-152 541.6 325 79.7
BcaB05g25256 Brassica carinata HOM05D001993 ORTHO05D009037 9.0e-148 527.7 469 67.8
Sp5g35200 Schrenkiella parvula HOM05D001993 ORTHO05D009037 4.5e-147 525.4 468 62.0
Thhalv10018507m.g Eutrema salsugineum HOM05D001993 ORTHO05D009037 1.1e-145 520.8 469 61.2
CARHR073940 Cardamine hirsuta HOM05D001993 ORTHO05D009037 7.7e-139 498.0 469 64.8
Sc12g0006740 Simmondsia chinensis HOM05D001993 ORTHO05D009037 7.9e-136 488.0 396 74.5
Hund06538 Selenicereus undatus HOM05D001993 ORTHO05D009037 1.4e-135 487.3 284 81.0
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 4.8e-133 478.8 468 63.5
BraA02t07336Z Brassica rapa HOM05D002499 ORTHO05D002812 5.5e-129 465.3 466 62.2
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 2.1e-128 463.4 468 62.4
Nn2g12225 Nelumbo nucifera HOM05D001993 ORTHO05D009037 6.7e-119 431.8 369 59.9
Nn2g12227 Nelumbo nucifera HOM05D001993 ORTHO05D009037 5.0e-114 415.6 474 55.1
SalBow6G3135 Salvia bowleyana HOM05D001993 ORTHO05D009037 3.1e-108 396.4 270 69.6
FAN05G0349 Fragaria x ananassa HOM05D001993 ORTHO05D009037 2.2e-106 390.2 392 66.8
SMO137G0150 Selaginella moellendorffii HOM05D001993 ORTHO05D009037 8.6e-82 308.5 398 44.0
FAN02G3408 Fragaria x ananassa HOM05D001993 ORTHO05D009037 1.1e-79 301.6 214 70.1
Os12g0517100 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.3e-73 279.6 407 39.8
Os12g0516900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.4e-70 269.6 397 39.5
Os12g0517000 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.7e-67 260.4 406 38.2
Os04g0370600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.1e-65 255.0 404 36.4
Os04g0370500 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.4e-52 211.5 409 34.5
Mapoly0145s0024 Marchantia polymorpha HOM05D001993 ORTHO05D009037 8.7e-50 202.2 408 31.4
Os02g0798900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.1e-43 181.0 196 45.4
Os12g0526600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.5e-38 163.3 203 40.4
Os04g0371600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.9e-37 160.6 291 35.1
BcaB05g22992 Brassica carinata HOM05D001993 ORTHO05D009037 1.9e-33 147.9 120 60.0
Os04g0370300 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.7e-29 134.8 194 37.6
Os02g0798800 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.2e-22 112.1 177 37.3
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 5.1e-10 70.1 204 30.9
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 8.8e-10 69.3 306 24.5
SEGI_05713 Sequoiadendron giganteum HOM05D001905 ORTHO05D001820 1.5e-09 68.6 402 22.9
Hund15983 Selenicereus undatus HOM05D000530 ORTHO05D003341 2.0e-09 68.2 378 23.3
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 3.3e-09 67.4 202 30.2
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 2.8e-08 64.3 212 28.3
Duzib052G0700 Durio zibethinus HOM05D002762 ORTHO05D004643 8.2e-08 62.8 204 27.9
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 1.1e-07 62.4 355 26.5
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 1.1e-07 62.4 362 24.0
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 1.8e-07 61.6 208 27.9
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 1.6e-06 58.5 204 25.5
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 1.6e-06 58.5 204 25.5
MD02G1178100 Malus domestica HOM05D001905 ORTHO05D001820 2.0e-06 58.2 454 23.6
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 2.0e-06 58.2 343 23.6
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 2.6e-06 57.8 207 24.2
Sp5g12030 Schrenkiella parvula HOM05D001905 ORTHO05D001820 2.6e-06 57.8 363 24.8
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 2.6e-06 57.8 276 24.6
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 3.5e-06 57.4 202 25.7
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 3.5e-06 57.4 217 24.0
Gohir.A09G231600 Gossypium hirsutum HOM05D002762 ORTHO05D004643 3.5e-06 57.4 204 25.5
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 4.5e-06 57.0 270 24.4
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 5.9e-06 56.6 205 25.4
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 5.9e-06 56.6 330 22.4


User provided reference genes

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