Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0033500 Salix brachista HOM05D000300 ORTHO05D016315 5.5e-69 264.2 138 100.0
Sabra17G0033000 Salix brachista HOM05D000300 ORTHO05D009414 1.0e-51 206.8 109 99.1
Sabra17G0034200 Salix brachista HOM05D000300 ORTHO05D009414 5.2e-51 204.5 109 98.2
Sabra17G0034600 Salix brachista HOM05D000300 ORTHO05D016315 9.7e-50 200.3 109 96.3
Potri.017G048500 Populus trichocarpa HOM05D000300 ORTHO05D009414 1.7e-46 189.5 109 90.8
Sabra17G0035000 Salix brachista HOM05D000300 ORTHO05D016315 1.7e-46 189.5 100 100.0
Sabra17G0035600 Salix brachista HOM05D000300 ORTHO05D016315 4.7e-44 181.4 99 94.9
Sabra17G0035800 Salix brachista HOM05D000300 ORTHO05D009414 5.0e-38 161.4 109 83.5
Manes.10G102400 Manihot esculenta HOM05D000300 ORTHO05D009414 1.8e-27 126.3 109 68.8
Eucgr.G00959 Eucalyptus grandis HOM05D000300 ORTHO05D009414 1.5e-21 106.7 110 60.0
Ciclev10006919m.g Citrus clementina HOM05D000300 ORTHO05D009414 1.8e-19 99.8 82 65.9
Duzib132G1192 Durio zibethinus HOM05D000300 ORTHO05D009414 4.0e-19 98.6 109 60.6
Glyma.15G056300 Glycine max HOM05D000300 ORTHO05D009414 5.2e-19 98.2 113 54.0
EL10Ac9g21219 Beta vulgaris HOM05D000300 ORTHO05D009414 6.8e-19 97.8 110 54.5
CiPaw.05G031600 Carya illinoinensis HOM05D000300 ORTHO05D009414 8.9e-19 97.4 120 50.8
COL.COLO4_32349 Corchorus olitorius HOM05D000266 ORTHO05D009414 1.5e-18 96.7 109 56.0
Lalb_Chr20g0122861 Lupinus albus HOM05D000300 ORTHO05D009414 1.5e-18 96.7 110 52.7
VMungo0540G0879 Vigna mungo HOM05D000300 ORTHO05D009414 1.5e-18 96.7 109 55.0
Glyma.08G176700 Glycine max HOM05D000300 ORTHO05D009414 2.0e-18 96.3 109 55.0
PGR042G2738 Punica granatum HOM05D000300 ORTHO05D009414 2.6e-18 95.9 118 51.7
Ca_13361_v3 Cicer arietinum L. HOM05D000300 ORTHO05D009414 5.8e-18 94.7 82 59.8
AUR62011726 Chenopodium quinoa HOM05D000300 ORTHO05D009414 7.5e-18 94.4 109 51.4
Gorai.013G057100 Gossypium raimondii HOM05D000300 ORTHO05D009414 7.5e-18 94.4 109 56.0
arahy.Tifrunner.gnm1.ann1.4LD1Z3 Arachis hypogaea HOM05D000300 ORTHO05D009414 9.8e-18 94.0 113 49.6
Gohir.D13G051000 Gossypium hirsutum HOM05D000300 ORTHO05D009414 9.8e-18 94.0 109 56.9
arahy.Tifrunner.gnm1.ann1.A637LE Arachis hypogaea HOM05D000300 ORTHO05D009414 1.3e-17 93.6 113 50.4
Dinv24164 Davidia involucrata HOM05D000300 ORTHO05D009414 1.7e-17 93.2 114 53.5
RcHm_v2.0_Chr6g0271371 Rosa chinensis HOM05D000300 ORTHO05D009414 1.7e-17 93.2 109 53.2
MD10G1053300 Malus domestica HOM05D000300 ORTHO05D009414 2.2e-17 92.8 109 51.4
MD05G1046500 Malus domestica HOM05D000300 ORTHO05D009414 2.9e-17 92.4 109 54.1
Thecc.02G132800 Theobroma cacao HOM05D000266 ORTHO05D009414 2.9e-17 92.4 82 67.1
Solyc10g047370.2 Solanum lycopersicum HOM05D000300 ORTHO05D009414 3.7e-17 92.0 120 47.5
GSVIVG01035156001 Vitis vinifera HOM05D000300 ORTHO05D009414 3.7e-17 92.0 75 64.0
Gohir.A13G070700 Gossypium hirsutum HOM05D000300 ORTHO05D009414 4.9e-17 91.7 109 56.0
Lsat_1_v5_gn_9_115340 Lactuca sativa HOM05D000300 ORTHO05D009414 4.9e-17 91.7 94 53.2
Hund06157 Selenicereus undatus HOM05D000300 ORTHO05D009414 4.9e-17 91.7 108 54.6
HanXRQChr03g0068161 Helianthus annuus HOM05D000300 ORTHO05D009414 6.4e-17 91.3 65 70.8
Sopen10g017690 Solanum pennellii HOM05D000300 ORTHO05D009414 6.4e-17 91.3 120 47.5
Medtr1g022400 Medicago truncatula HOM05D000300 ORTHO05D009414 8.3e-17 90.9 112 49.1
Cfa005691 Carpinus fangiana HOM05D000018 ORTHO05D001333 1.1e-16 90.5 55 74.5
Phvul.006G203700 Phaseolus vulgaris HOM05D000300 ORTHO05D009414 1.1e-16 90.5 109 53.2
Sed0018179 Sechium edule HOM05D000300 ORTHO05D009414 1.1e-16 90.5 113 48.7
CARHR203930 Cardamine hirsuta HOM05D000300 ORTHO05D009414 1.4e-16 90.1 67 67.2
Lj6g0013316 Lotus japonicus HOM05D000300 ORTHO05D009414 1.4e-16 90.1 123 48.0
Psat6g008280 Pisum sativum HOM05D000300 ORTHO05D009414 1.9e-16 89.7 85 51.8
TAR628G1496 Trochodendron aralioides HOM05D000300 ORTHO05D009414 2.4e-16 89.4 109 49.5
Hma1.2p1_0522F.1_g171980 Hydrangea macrophylla HOM05D000300 ORTHO05D016315 3.2e-16 89.0 121 48.8
Hma1.2p1_2187F.1_g316510 Hydrangea macrophylla HOM05D000300 ORTHO05D009414 3.2e-16 89.0 119 50.4
CANSAT11G0314 Cannabis sativa HOM05D000300 ORTHO05D009414 4.1e-16 88.6 112 50.0
QL11p023725 Quercus lobata HOM05D000300 ORTHO05D009414 4.1e-16 88.6 58 69.0
PGSC0003DMG400004497 Solanum tuberosum HOM05D000300 ORTHO05D009414 4.1e-16 88.6 120 45.8
Actinidia04405 Actinidia chinensis HOM05D000300 ORTHO05D009414 7.0e-16 87.8 115 47.8
Nn5g29954 Nelumbo nucifera HOM05D000300 ORTHO05D000383 7.0e-16 87.8 113 52.2
Aqoxy6G00676 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 9.2e-16 87.4 64 65.6
Carub.0006s0801 Capsella rubella HOM05D000300 ORTHO05D009414 9.2e-16 87.4 82 56.1
DCAR_029191 Daucus carota HOM05D000300 ORTHO05D009414 9.2e-16 87.4 71 62.0
TPR.G20176 Trifolium pratense HOM05D000300 ORTHO05D009414 9.2e-16 87.4 111 47.7
CSS0030899 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D009414 1.2e-15 87.0 117 47.9
CSS0044428 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D009414 1.2e-15 87.0 117 47.9
Nitab4.5_0002475g0020 Nicotiana tabacum HOM05D000300 ORTHO05D009414 1.2e-15 87.0 78 60.3
AT5G09450 Arabidopsis thaliana HOM05D000300 ORTHO05D009414 1.6e-15 86.7 82 56.1
MSTRG.16606 Avicennia marina HOM05D000300 ORTHO05D009414 1.6e-15 86.7 120 45.8
Nitab4.5_0000313g0080 Nicotiana tabacum HOM05D000300 ORTHO05D009414 1.6e-15 86.7 77 59.7
BcaB05g21550 Brassica carinata HOM05D000300 ORTHO05D009414 2.0e-15 86.3 63 65.1
FAN20G2091 Fragaria x ananassa HOM05D000300 ORTHO05D009414 2.0e-15 86.3 109 48.6
Ah.01g024080 Amaranthus hybridus HOM05D000300 ORTHO05D009414 4.6e-15 85.1 78 56.4
ClCG09G015930 Citrullus lanatus HOM05D000300 ORTHO05D009414 4.6e-15 85.1 65 64.6
Migut.B00572 Erythranthe guttata HOM05D000300 ORTHO05D009414 4.6e-15 85.1 76 56.6
BcaC03g13257 Brassica carinata HOM05D000300 ORTHO05D009414 6.0e-15 84.7 87 52.9
C02p03880 Brassica napus HOM05D000300 ORTHO05D009414 6.0e-15 84.7 87 52.9
BolC2t06350H Brassica oleracea HOM05D000300 ORTHO05D009414 6.0e-15 84.7 87 52.9
BraA02t04983Z Brassica rapa HOM05D000300 ORTHO05D009414 6.0e-15 84.7 67 59.7
FvH4_2g11810 Fragaria vesca HOM05D000300 ORTHO05D009414 6.0e-15 84.7 55 72.7
HPP92_016759 Vanilla planifolia HOM05D000300 ORTHO05D016315 6.0e-15 84.7 121 47.1
CAN.G196.4 Capsicum annuum HOM05D000300 ORTHO05D009414 7.8e-15 84.3 116 46.6
Cpa.g.sc42.18 Carica papaya HOM05D000300 ORTHO05D009414 7.8e-15 84.3 135 45.9
ECA240G1843 Erigeron canadensis HOM05D000300 ORTHO05D009414 7.8e-15 84.3 84 52.4
SGA_v2.0_scaffold83G26348 Striga asiatica HOM05D000300 ORTHO05D009414 7.8e-15 84.3 120 44.2
TWI14G0933 Tripterygium wilfordii HOM05D000300 ORTHO05D009414 7.8e-15 84.3 119 46.2
AL6G19850 Arabidopsis lyrata HOM05D000300 ORTHO05D009414 1.0e-14 84.0 81 55.6
FAN06G1698 Fragaria x ananassa HOM05D000300 ORTHO05D016315 1.0e-14 84.0 110 47.3
FAN06G4006 Fragaria x ananassa HOM05D000300 ORTHO05D016315 1.0e-14 84.0 110 47.3
FAN27G3218 Fragaria x ananassa HOM05D000300 ORTHO05D016315 1.0e-14 84.0 110 47.3
Thhalv10013686m.g Eutrema salsugineum HOM05D000300 ORTHO05D009414 1.3e-14 83.6 81 51.9
PSO675G5396 Papaver somniferum HOM05D000300 ORTHO05D009414 1.3e-14 83.6 108 44.4
SalBow8G0438 Salvia bowleyana HOM05D000300 ORTHO05D009414 1.7e-14 83.2 60 61.7
Cc02_g21070 Coffea canephora HOM05D000300 ORTHO05D009414 2.3e-14 82.8 118 44.9
Sp6g33880 Schrenkiella parvula HOM05D000300 ORTHO05D009414 2.3e-14 82.8 62 59.7
Aa31LG3G17550 Aethionema arabicum HOM05D000300 ORTHO05D009414 3.0e-14 82.4 65 61.5
FAN24G0018 Fragaria x ananassa HOM05D000300 ORTHO05D009414 3.9e-14 82.0 55 70.9
Atru.chr6.1223 Acer truncatum HOM05D000300 ORTHO05D009414 6.6e-14 81.3 113 46.9
FAN15G2144 Fragaria x ananassa HOM05D000300 ORTHO05D009414 6.6e-14 81.3 109 45.9
unitig_46.g18831 Utricularia gibba HOM05D000300 ORTHO05D009414 8.6e-14 80.9 111 45.0
THA.LOC104819326 Tarenaya hassleriana HOM05D000300 ORTHO05D009414 1.1e-13 80.5 65 60.0
CsaV3_7G007050 Cucumis sativus L. HOM05D000300 ORTHO05D009414 1.9e-13 79.7 119 47.1
Sc14g0003380 Simmondsia chinensis HOM05D000300 ORTHO05D009414 3.3e-13 79.0 78 57.7
TAR381G0166 Trochodendron aralioides HOM05D000300 ORTHO05D000383 5.6e-13 78.2 112 46.4
CDE05G2045 Ceratophyllum demersum HOM05D000300 ORTHO05D009414 9.5e-13 77.4 92 52.2
ATR0022G020 Amborella trichopoda HOM05D000300 ORTHO05D009414 1.6e-12 76.6 66 56.1
Hma1.2p1_0190F.1_g082950 Hydrangea macrophylla HOM05D000300 ORTHO05D016315 2.1e-12 76.3 79 54.4
Hma1.2p1_0024F.1_g016170 Hydrangea macrophylla HOM05D000300 ORTHO05D016315 2.8e-12 75.9 93 47.3
Dinv42650 Davidia involucrata HOM05D000300 ORTHO05D000383 6.2e-12 74.7 95 46.3
Hma1.2p1_1666F.1_g296530 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 6.2e-12 74.7 72 54.2
MBI02_g18295_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D009414 1.4e-11 73.6 112 46.4
SHI04958 Sapria himalayana HOM05D000300 ORTHO05D009414 3.1e-11 72.4 95 48.4
MELO3C018589.2 Cucumis melo HOM05D000300 ORTHO05D009414 1.5e-10 70.1 112 47.3
Actinidia10357 Actinidia chinensis HOM05D000300 ORTHO05D000383 5.8e-10 68.2 100 40.0
Prupe.1G525900 Prunus persica HOM05D000300 ORTHO05D000383 7.5e-10 67.8 94 42.6
Atru.chr13.1065 Acer truncatum HOM05D000300 ORTHO05D000383 6.4e-09 64.7 60 53.3
Atru.chr13.1071 Acer truncatum HOM05D000300 ORTHO05D000383 6.4e-09 64.7 60 53.3
Lsat_1_v5_gn_1_2541 Lactuca sativa HOM05D000300 ORTHO05D000383 2.4e-08 62.8 83 43.4
GSVIVG01009119001 Vitis vinifera HOM05D000300 ORTHO05D000383 2.4e-08 62.8 55 49.1
Zm00001eb081350 Zea mays HOM05D000300 ORTHO05D009414 3.2e-08 62.4 55 52.7
CSS0004744 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 4.1e-08 62.0 74 47.3
CSS0005763 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 4.1e-08 62.0 74 47.3
Cc10_g15420 Coffea canephora HOM05D000300 ORTHO05D000383 5.4e-08 61.6 90 44.4
MBI06_g18782_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D000383 7.1e-08 61.2 80 45.0
TAR627G0683 Trochodendron aralioides HOM05D000300 ORTHO05D000383 2.7e-07 59.3 81 42.0
RcHm_v2.0_Chr7g0237751 Rosa chinensis HOM05D000300 ORTHO05D000383 3.5e-07 58.9 93 39.8
vmacro21936 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 3.5e-07 58.9 82 43.9
Hund10803 Selenicereus undatus HOM05D000300 ORTHO05D000383 4.6e-07 58.5 56 51.8
Ah.16g101420 Amaranthus hybridus HOM05D000300 ORTHO05D000383 6.0e-07 58.2 58 50.0
MD15G1379700 Malus domestica HOM05D000300 ORTHO05D000383 6.0e-07 58.2 56 51.8
CsaV3_1G012220 Cucumis sativus L. HOM05D000300 ORTHO05D000383 7.8e-07 57.8 56 53.6
CSS0029523 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.3e-06 57.0 55 50.9
ECA247G3293 Erigeron canadensis HOM05D000300 ORTHO05D000383 1.3e-06 57.0 56 46.4
Lj1g0002109 Lotus japonicus HOM05D000300 ORTHO05D000383 1.3e-06 57.0 57 47.4
HanXRQChr04g0115151 Helianthus annuus HOM05D000300 ORTHO05D000383 2.3e-06 56.2 57 47.4
Rhsim06G0075400 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.3e-06 56.2 87 40.2
C02p39570 Brassica napus HOM05D000300 ORTHO05D000383 3.0e-06 55.8 105 36.2
MELO3C015840.2 Cucumis melo HOM05D000300 ORTHO05D000383 3.0e-06 55.8 55 50.9
MELO3C018741.2 Cucumis melo HOM05D000300 ORTHO05D000383 3.9e-06 55.5 61 41.0
Sc07g0007900 Simmondsia chinensis HOM05D000300 ORTHO05D000383 3.9e-06 55.5 74 44.6
Aqoxy2G03317 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 5.1e-06 55.1 55 47.3
Ciclev10000753m.g Citrus clementina HOM05D000300 ORTHO05D000383 5.1e-06 55.1 118 37.3
FAN18G2020 Fragaria x ananassa HOM05D000300 ORTHO05D000383 5.1e-06 55.1 54 48.1
Oeu050844.1 Olea europaea HOM05D000300 ORTHO05D000383 5.1e-06 55.1 65 52.3
Oeu050847.1 Olea europaea HOM05D000300 ORTHO05D000383 5.1e-06 55.1 65 52.3
Eucgr.F03326 Eucalyptus grandis HOM05D000300 ORTHO05D000383 6.6e-06 54.7 54 48.1
Thhalv10028573m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 6.6e-06 54.7 114 35.1
vmacro07531 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 6.6e-06 54.7 55 49.1
Actinidia39312 Actinidia chinensis HOM05D000300 ORTHO05D000383 8.6e-06 54.3 97 37.1
Haze_22360 Corylus avellana HOM05D000300 ORTHO05D000383 8.6e-06 54.3 56 46.4
Migut.M01147 Erythranthe guttata HOM05D000300 ORTHO05D000383 8.6e-06 54.3 57 50.9
Peaxi162Scf00003g03344 Petunia axillaris HOM05D000300 ORTHO05D009414 8.6e-06 54.3 112 33.9
Potri.013G132500 Populus trichocarpa HOM05D000300 ORTHO05D000383 8.6e-06 54.3 60 41.7
Sabra13G0111900 Salix brachista HOM05D000300 ORTHO05D000383 8.6e-06 54.3 59 45.8
Sp6g02850 Schrenkiella parvula HOM05D000300 ORTHO05D000383 8.6e-06 54.3 107 35.5
Sc11g0008540 Simmondsia chinensis HOM05D000300 ORTHO05D000383 8.6e-06 54.3 56 48.2
THA.LOC109116614 Tarenaya hassleriana HOM05D000300 ORTHO05D018168 8.6e-06 54.3 49 55.1
unitig_0.g113 Utricularia gibba HOM05D000300 ORTHO05D000383 8.6e-06 54.3 83 42.2


User provided reference genes

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