Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 3.1e-102 375.2 191 100.0
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.1e-91 340.1 191 89.5
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.0e-89 333.6 191 89.5
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.6e-81 304.3 189 79.9
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.3e-80 301.6 189 78.8
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 7.3e-80 300.8 191 77.0
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 7.3e-80 300.8 188 78.7
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 9.6e-80 300.4 187 79.7
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 9.6e-80 300.4 188 78.2
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.7e-79 298.1 189 77.8
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.4e-78 296.6 189 77.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.4e-78 295.8 191 75.9
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.1e-78 295.4 188 77.1
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 8.9e-78 293.9 186 78.0
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 2.6e-77 292.4 190 77.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 2.6e-77 292.4 175 80.6
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 2.6e-77 292.4 176 80.1
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.4e-77 291.6 192 77.1
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.8e-77 291.2 186 75.8
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 5.8e-77 291.2 186 78.5
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-76 290.0 186 78.0
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-76 290.0 188 76.1
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.2e-76 289.3 187 76.5
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 4.9e-76 288.1 172 80.8
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 8.4e-76 287.3 186 76.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.1e-75 287.0 190 74.7
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.4e-75 286.6 186 76.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.9e-75 286.2 189 74.6
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 4.2e-75 285.0 192 77.6
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.2e-75 285.0 172 78.5
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 5.4e-75 284.6 192 74.0
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.4e-75 284.6 191 74.3
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 7.1e-75 284.3 192 75.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 9.3e-75 283.9 198 71.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.3e-75 283.9 196 71.9
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.1e-74 282.7 192 76.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.7e-74 282.3 192 74.5
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.5e-74 282.0 193 74.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 3.5e-74 282.0 192 76.0
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.5e-74 282.0 186 75.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 6.0e-74 281.2 189 70.4
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 7.8e-74 280.8 188 73.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.0e-73 280.4 190 74.2
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.3e-73 280.0 192 75.0
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.3e-73 280.0 192 75.0
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 5.1e-73 278.1 167 80.2
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 8.7e-73 277.3 172 77.3
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.1e-72 276.9 175 74.9
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.5e-72 276.6 172 78.5
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 4.3e-72 275.0 172 76.7
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.3e-72 275.0 174 76.4
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 5.6e-72 274.6 173 76.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 7.3e-72 274.2 187 70.1
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 7.3e-72 274.2 170 77.1
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.1e-71 272.7 172 75.6
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.8e-71 272.3 189 70.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.8e-71 271.6 188 70.7
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.1e-70 270.4 165 78.8
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.4e-70 269.2 182 72.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.0e-70 268.5 185 68.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.3e-70 268.1 185 69.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.9e-70 267.7 172 74.4
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.9e-70 267.7 172 74.4
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 6.9e-70 267.7 185 68.6
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 6.9e-70 267.7 185 68.6
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 9.0e-70 267.3 185 68.6
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 9.0e-70 267.3 172 73.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 9.0e-70 267.3 188 72.9
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 3.4e-69 265.4 186 71.5
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 3.4e-69 265.4 171 74.3
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 4.5e-69 265.0 173 74.0
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 4.5e-69 265.0 182 72.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 9.9e-69 263.8 172 72.1
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-68 263.1 190 69.5
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.2e-68 262.7 172 73.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 3.8e-68 261.9 170 73.5
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.8e-68 261.9 172 72.1
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.1e-67 260.4 182 71.4
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.4e-67 259.2 168 75.0
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 4.2e-67 258.5 182 70.3
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 9.3e-67 257.3 168 75.0
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 9.3e-67 257.3 168 75.0
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 9.3e-67 257.3 188 70.2
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.2e-66 256.9 173 71.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-66 256.9 172 69.2
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.6e-66 256.5 183 65.6
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.1e-66 256.1 182 69.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.1e-66 256.1 182 67.0
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.1e-66 256.1 171 71.9
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.5e-66 255.4 172 73.3
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 4.6e-66 255.0 172 72.1
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.0e-65 253.8 175 72.0
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.8e-65 253.1 156 78.2
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 3.9e-65 251.9 182 71.4
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.7e-65 251.1 162 74.1
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 6.7e-65 251.1 180 67.2
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.1e-64 250.4 171 71.9
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.5e-64 250.0 171 71.3
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.9e-64 249.6 184 63.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.5e-64 249.2 188 65.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.3e-64 248.8 169 69.8
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.4e-64 247.7 168 72.0
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 9.6e-64 247.3 165 72.1
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 9.6e-64 247.3 168 73.2
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-63 246.5 163 71.8
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.1e-63 246.1 172 68.6
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.1e-63 246.1 167 71.3
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.1e-62 243.8 165 71.5
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.4e-62 243.4 160 72.5
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-62 243.4 173 69.9
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.4e-62 242.7 173 67.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 5.3e-62 241.5 173 68.2
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 6.9e-62 241.1 165 70.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 9.0e-62 240.7 173 68.2
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.6e-61 239.2 168 67.9
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.4e-61 238.8 160 71.2
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.4e-61 238.8 170 70.0
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 5.8e-61 238.0 168 66.7
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 5.8e-61 238.0 168 67.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 9.9e-61 237.3 163 68.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.2e-60 236.1 168 67.3
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.2e-60 236.1 164 71.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.4e-59 233.4 169 67.5
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.4e-59 233.4 168 68.5
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 9.3e-59 230.7 134 79.1
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.1e-58 229.6 171 65.5
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.0e-57 225.7 163 66.3
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.5e-56 222.6 168 66.1
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.5e-56 222.6 168 66.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.5e-56 222.6 171 64.9
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 3.3e-56 222.2 164 64.6
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 7.4e-56 221.1 173 61.8
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-55 219.5 168 64.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-55 219.5 168 64.9
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.8e-54 216.5 185 59.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.4e-54 216.1 177 62.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.4e-54 216.1 134 75.4
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 4.5e-53 211.8 165 61.8
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.8e-53 211.5 182 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 7.6e-53 211.1 160 61.9
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.4e-52 207.6 161 62.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 8.4e-52 207.6 166 65.1
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.9e-51 206.5 159 60.4
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-49 200.3 139 74.1
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.9e-49 198.7 150 63.3
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 8.7e-49 197.6 189 56.6
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.5e-48 196.8 155 60.0
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.3e-48 195.7 189 52.9
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.6e-48 194.1 159 57.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.6e-47 193.4 160 60.6
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.4e-46 189.5 176 58.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 5.3e-46 188.3 157 63.1
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.6e-45 186.0 162 61.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.5e-45 185.3 129 72.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.0e-44 181.8 128 72.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.9e-43 179.9 169 55.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.5e-43 179.5 169 55.6
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.5e-43 179.5 163 55.2
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.6e-42 176.8 173 52.6
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.6e-42 176.8 142 55.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.9e-41 172.2 132 65.9
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.3e-40 169.1 124 65.3
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.7e-36 156.8 116 69.8
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.3e-32 142.5 99 70.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.7e-32 141.7 90 74.4
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 4.8e-31 138.7 175 49.7
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.3e-30 135.2 93 71.0
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 6.9e-30 134.8 94 61.7
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.0e-29 133.3 91 65.9
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.0e-28 128.6 148 41.9
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.5e-24 117.1 73 74.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.5e-20 101.3 69 79.7
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.7e-16 87.8 79 54.4
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.0e-12 77.8 107 43.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-11 72.0 71 50.7
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 2.7e-10 69.7 36 80.6
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.7e-10 69.7 174 28.7
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.6e-10 69.3 36 83.3
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 4.0e-09 65.9 79 46.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.2e-08 64.3 180 29.4
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 3.4e-08 62.8 40 70.0
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-07 59.3 39 66.7
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.1e-06 57.8 37 70.3
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 1.1e-06 57.8 40 65.0


User provided reference genes

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