Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0024700 Salix brachista HOM05D000003 ORTHO05D000022 5.6e-98 360.9 178 100.0
Sabra17G0024600 Salix brachista HOM05D000003 ORTHO05D000022 2.6e-63 245.7 152 80.3
Sabra17G0024800 Salix brachista HOM05D000003 ORTHO05D000022 9.6e-58 227.3 141 81.6
Sabra17G0024900 Salix brachista HOM05D000003 ORTHO05D000022 2.8e-57 225.7 141 80.9
Sabra17G0051600 Salix brachista HOM05D000003 ORTHO05D000022 1.2e-23 114.0 147 48.3
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-13 80.1 117 41.9
Sabra01G0106600 Salix brachista HOM05D000003 ORTHO05D000022 1.6e-12 77.0 116 37.1
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-12 76.3 137 35.0
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 3.6e-12 75.9 140 35.7
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 3.6e-12 75.9 136 36.0
Sabra09G0061300 Salix brachista HOM05D000003 ORTHO05D000022 3.6e-12 75.9 116 37.1
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-11 74.3 139 35.3
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-11 72.8 120 39.2
Atru.chr4.172 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-11 72.4 112 38.4
arahy.Tifrunner.gnm1.ann1.PA7RNP Arachis hypogaea HOM05D000003 ORTHO05D000022 3.9e-11 72.4 138 31.9
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 5.2e-11 72.0 136 34.6
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-11 72.0 116 37.9
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-11 72.0 118 39.8
Atru.chr3.2099 Acer truncatum HOM05D000003 ORTHO05D000022 8.8e-11 71.2 121 39.7
arahy.Tifrunner.gnm1.ann1.C14R7W Arachis hypogaea HOM05D000003 ORTHO05D000022 8.8e-11 71.2 138 31.9
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 8.8e-11 71.2 123 37.4
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-10 70.9 118 39.8
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 1.1e-10 70.9 117 40.2
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.5e-10 70.5 124 35.5
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-10 70.1 101 41.6
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-10 69.7 137 35.8
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-10 69.7 137 32.8
Atru.chr10.1248 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-10 68.6 137 32.1
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-10 68.2 136 34.6
Sabra07G0074300 Salix brachista HOM05D000609 ORTHO05D000462 7.4e-10 68.2 128 38.3
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 9.7e-10 67.8 106 40.6
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 9.7e-10 67.8 84 44.0
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-09 67.4 139 33.1
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-09 67.4 88 40.9
Atru.chr2.1762 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-09 67.4 103 39.8
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-09 67.0 103 37.9
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-09 66.6 117 35.9
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-09 66.6 117 33.3
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-09 66.6 137 33.6
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-09 66.6 125 35.2
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-09 66.6 116 35.3
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-09 66.6 118 39.0
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-09 66.6 103 39.8
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-09 66.2 84 42.9
Atru.chr1.3262 Acer truncatum HOM05D000003 ORTHO05D000022 3.7e-09 65.9 120 37.5
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 3.7e-09 65.9 127 33.1
QL01p018268 Quercus lobata HOM05D000155 ORTHO05D000022 3.7e-09 65.9 123 32.5
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 3.7e-09 65.9 117 37.6
CSS0023133 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.8e-09 65.5 124 33.9
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-09 65.1 139 33.1
Atru.chr2.2857 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-09 65.1 122 33.6
Atru.chr3.1552 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-09 65.1 88 37.5
Atru.chr4.899 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-09 65.1 120 35.8
Atru.chr5.1996 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-09 65.1 152 30.3
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 6.3e-09 65.1 116 37.9
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 8.2e-09 64.7 118 36.4
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-09 64.7 103 37.9
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-09 64.7 138 34.1
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-09 64.7 88 39.8
Atru.chr8.699 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-09 64.7 108 38.9
Atru.chr4.1024 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-08 64.3 85 42.4
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-08 64.3 101 39.6
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-08 64.3 140 32.1
Atru.chr8.1133 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-08 64.3 140 31.4
CSS0010523 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-08 64.3 124 33.9
CSS0044722 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-08 64.3 124 33.9
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-08 63.9 117 36.8
SHI38779 Sapria himalayana HOM05D000155 ORTHO05D000022 1.4e-08 63.9 122 34.4
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-08 63.5 117 33.3
Atru.chr3.2744 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-08 63.5 103 35.0
Atru.chr3.867 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-08 63.2 117 36.8
CSS0043443 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-08 63.2 120 32.5
TPR.G21331 Trifolium pratense HOM05D000003 ORTHO05D000022 3.1e-08 62.8 123 31.7
Atru.chr8.2517 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-08 62.4 83 37.3
Atru.chr9.1443 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-08 62.4 106 32.1
arahy.Tifrunner.gnm1.ann1.WYFF13 Arachis hypogaea HOM05D000155 ORTHO05D000022 4.1e-08 62.4 131 31.3
CSS0010509 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.1e-08 62.4 124 32.3
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 4.1e-08 62.4 109 31.2
Sabra16G0000700 Salix brachista HOM05D060723 ORTHO05D000022 4.1e-08 62.4 132 37.1
Atru.chr11.90 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-08 62.0 93 41.9
Atru.chr5.1030 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-08 62.0 103 35.9
Atru.chr3.1879 Acer truncatum HOM05D000003 ORTHO05D000022 7.0e-08 61.6 113 30.1
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 7.0e-08 61.6 115 33.0
CSS0007605 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.0e-08 61.6 126 31.0
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 9.1e-08 61.2 128 32.0
Atru.chr3.2588 Acer truncatum HOM05D000003 ORTHO05D000022 9.1e-08 61.2 103 30.1
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 9.1e-08 61.2 83 45.8
Atru.chr7.170 Acer truncatum HOM05D000003 ORTHO05D000022 9.1e-08 61.2 115 30.4
Phvul.001G128200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 9.1e-08 61.2 120 31.7
TPR.G17895 Trifolium pratense HOM05D000003 ORTHO05D000022 9.1e-08 61.2 122 32.0
Atru.chr3.1522 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-07 60.8 140 30.7
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 1.2e-07 60.8 116 33.6
Atru.chr5.1023 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-07 60.5 103 35.0
CSS0026614 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.6e-07 60.5 119 32.8
TPR.G33526 Trifolium pratense HOM05D000155 ORTHO05D000022 1.6e-07 60.5 137 30.7
Atru.chr2.284 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-07 60.1 84 41.7
Atru.chr1.1867 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 59.7 86 39.5
Atru.chr12.2455 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 59.7 137 32.1
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 59.7 131 32.1
Prupe.1G446500 Prunus persica HOM05D000003 ORTHO05D000022 2.6e-07 59.7 117 30.8
VMungo1383G2358 Vigna mungo HOM05D000005 ORTHO05D000012 2.6e-07 59.7 120 31.7
Atru.chr5.2141 Acer truncatum HOM05D000003 ORTHO05D000022 3.5e-07 59.3 73 42.5
Hma1.2p1_0931F.1_g238170 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 3.5e-07 59.3 114 35.1
QL01p016224 Quercus lobata HOM05D000155 ORTHO05D000022 3.5e-07 59.3 86 38.4
Atru.chr4.827 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-07 58.9 83 36.1
CSS0016748 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 4.5e-07 58.9 121 30.6
Prupe.4G223300 Prunus persica HOM05D000279 ORTHO05D000022 4.5e-07 58.9 133 28.6
RcHm_v2.0_Chr3g0494391 Rosa chinensis HOM05D000003 ORTHO05D000022 4.5e-07 58.9 142 31.7
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 5.9e-07 58.5 97 37.1
Atru.chr4.1478 Acer truncatum HOM05D000003 ORTHO05D000022 5.9e-07 58.5 103 31.1
CSS0027105 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.9e-07 58.5 120 30.8
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 5.9e-07 58.5 116 30.2
QL01p016208 Quercus lobata HOM05D000155 ORTHO05D000022 5.9e-07 58.5 86 38.4
QL01p016211 Quercus lobata HOM05D000155 ORTHO05D000022 5.9e-07 58.5 86 38.4
RcHm_v2.0_Chr1g0356971 Rosa chinensis HOM05D000003 ORTHO05D000022 5.9e-07 58.5 121 34.7
RcHm_v2.0_Chr4g0426191 Rosa chinensis HOM05D000003 ORTHO05D000022 5.9e-07 58.5 142 31.7
CSS0033039 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.7e-07 58.2 120 29.2
Lj2C374T9 Lonicera japonica HOM05D000155 ORTHO05D000022 7.7e-07 58.2 125 30.4
SHI19424 Sapria himalayana HOM05D004990 ORTHO05D000022 7.7e-07 58.2 91 37.4
TPR.G36503 Trifolium pratense HOM05D008718 ORTHO05D010957 7.7e-07 58.2 123 30.1
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.7e-07 58.2 119 32.8
Atru.chr10.557 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-06 57.8 114 32.5
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-06 57.8 81 40.7
EL10Ac3g05611 Beta vulgaris HOM05D000003 ORTHO05D000022 1.0e-06 57.8 120 31.7
COL.COLO4_06865 Corchorus olitorius HOM05D007909 ORTHO05D000743 1.0e-06 57.8 113 32.7
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 1.0e-06 57.8 112 33.9
RcHm_v2.0_Chr1g0331331 Rosa chinensis HOM05D000003 ORTHO05D000022 1.0e-06 57.8 142 31.7
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 1.3e-06 57.4 112 33.9
QL01p018278 Quercus lobata HOM05D000003 ORTHO05D000022 1.3e-06 57.4 123 31.7
SHI10451 Sapria himalayana HOM05D000155 ORTHO05D000022 1.3e-06 57.4 118 29.7
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 57.0 79 40.5
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-06 57.0 123 35.8
Ca_11781_v3 Cicer arietinum L. HOM05D000155 ORTHO05D000022 1.7e-06 57.0 123 32.5
Lj1g0018212 Lotus japonicus HOM05D000003 ORTHO05D000022 2.2e-06 56.6 119 30.3
Psat1g119200 Pisum sativum HOM05D000003 ORTHO05D000022 2.2e-06 56.6 120 28.3
Atru.chr8.1687 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-06 56.2 97 35.1
arahy.Tifrunner.gnm1.ann1.3ZGA1D Arachis hypogaea HOM05D000155 ORTHO05D000022 2.9e-06 56.2 121 32.2
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 2.9e-06 56.2 112 33.9
Atru.chr9.518 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-06 55.8 85 37.6
CSS0020468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.8e-06 55.8 122 30.3
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.8e-06 55.8 120 32.5
CSS0047653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.8e-06 55.8 147 27.9
FvH4_6g16961 Fragaria vesca HOM05D000003 ORTHO05D000022 5.0e-06 55.5 120 35.0
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 5.0e-06 55.5 121 29.8
EL10Ac5g11712 Beta vulgaris HOM05D000003 ORTHO05D000022 6.5e-06 55.1 132 31.8
Gorai.002G074600 Gossypium raimondii HOM05D000003 ORTHO05D000022 6.5e-06 55.1 84 36.9
Prupe.1G097800 Prunus persica HOM05D000003 ORTHO05D000022 6.5e-06 55.1 120 32.5
TPR.G5368 Trifolium pratense HOM05D008718 ORTHO05D000022 6.5e-06 55.1 116 29.3
Ca_11916_v3 Cicer arietinum L. HOM05D000003 ORTHO05D000022 8.5e-06 54.7 105 32.4
Ca_27941_v3 Cicer arietinum L. HOM05D000085 ORTHO05D013008 8.5e-06 54.7 85 37.6


User provided reference genes

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