Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 0.0e+00 1194.5 634 100.0
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 0.0e+00 1128.2 634 94.2
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 7.6e-299 1030.0 640 85.2
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.5e-273 945.3 568 90.8
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 5.3e-244 847.8 636 69.2
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.7e-240 835.5 633 68.6
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 4.8e-237 824.7 634 68.0
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 3.0e-231 805.4 624 67.9
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.5e-230 803.1 634 66.7
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.0e-227 792.7 636 65.9
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 2.3e-226 789.3 634 66.2
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 2.3e-226 789.3 634 66.2
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 3.3e-225 785.4 647 63.7
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 4.7e-224 781.6 632 65.8
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 5.2e-223 778.1 635 63.8
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 6.8e-223 777.7 634 65.5
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 6.8e-223 777.7 638 63.5
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-221 773.5 647 62.8
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-221 772.3 647 62.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-221 772.3 647 62.8
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-221 772.3 647 62.8
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 8.3e-221 770.8 635 64.4
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-220 769.2 647 62.3
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.1e-220 768.8 635 64.1
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.4e-220 768.1 647 62.6
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.6e-219 766.5 647 62.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 4.5e-219 765.0 636 63.2
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.9e-218 762.3 635 64.1
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 5.0e-218 761.5 623 65.2
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.3e-217 758.8 647 61.5
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 9.5e-217 757.3 637 62.6
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 1.8e-215 753.1 638 61.9
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 7.5e-214 747.7 638 61.6
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.2e-211 740.3 639 62.8
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 3.9e-210 735.3 638 60.8
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.9e-210 735.3 639 62.6
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 8.9e-207 724.2 635 60.6
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 5.8e-206 721.5 636 61.2
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.9e-205 718.4 637 59.3
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 6.4e-205 718.0 604 62.7
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 4.6e-203 711.8 636 59.1
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 3.0e-202 709.1 633 60.0
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 3.7e-197 692.2 666 58.6
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.4e-196 690.3 636 58.6
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 5.4e-196 688.3 634 58.8
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 3.9e-194 682.2 634 56.8
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 5.1e-194 681.8 631 57.7
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 4.3e-193 678.7 654 56.4
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.2e-192 677.2 652 56.9
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 6.2e-192 674.9 639 58.1
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 3.1e-191 672.5 651 57.1
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.4e-190 668.7 633 57.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 4.9e-189 665.2 646 55.1
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 6.4e-189 664.8 640 57.0
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.4e-189 664.5 637 55.3
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 8.4e-189 664.5 640 56.6
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.4e-188 662.9 641 55.9
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.4e-188 662.9 640 57.7
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 5.4e-188 661.8 639 57.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 5.4e-188 661.8 650 56.5
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 2.7e-187 659.4 634 55.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 3.9e-186 655.6 631 55.5
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 6.6e-186 654.8 650 56.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.3e-185 652.5 650 56.0
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 4.3e-185 652.1 655 55.9
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.5e-182 643.7 631 55.6
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 5.8e-182 641.7 633 56.7
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.2e-181 639.8 634 54.4
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.9e-181 639.4 653 53.8
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 3.2e-180 636.0 651 53.6
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.0e-178 629.4 642 53.9
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.5e-177 627.1 636 54.1
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-177 626.3 636 53.9
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 2.5e-177 626.3 634 53.9
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 5.6e-177 625.2 634 53.8
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.6e-176 623.6 635 53.7
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.1e-176 623.2 631 54.2
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 2.8e-176 622.9 649 53.0
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 6.2e-176 621.7 642 53.3
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 5.8e-174 615.1 645 54.0
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 4.9e-173 612.1 647 54.3
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.2e-172 609.4 639 52.4
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 6.0e-171 605.1 630 52.7
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.0e-170 602.8 629 52.5
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 5.1e-170 602.1 590 56.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.2e-166 590.9 641 51.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 2.6e-166 589.7 634 51.9
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.3e-165 587.4 661 50.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.5e-161 573.2 627 51.7
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.5e-161 573.2 653 49.9
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 9.6e-161 571.2 665 49.5
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 9.0e-159 564.7 619 50.7
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.2e-158 564.3 650 50.9
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.6e-158 563.1 637 51.6
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 3.4e-158 562.8 619 52.3
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.7e-157 560.5 555 57.1
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 4.6e-155 552.4 594 52.5
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 5.7e-153 545.4 629 48.8
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.3e-152 542.0 470 62.3
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.9e-149 533.1 659 49.3
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.2e-148 529.3 470 61.5
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 8.8e-146 521.5 422 65.4
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 6.1e-139 498.8 669 44.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 2.3e-138 496.9 669 45.0
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 3.3e-137 493.0 663 44.0
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 5.7e-137 492.3 636 45.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 6.3e-136 488.8 634 45.7
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 4.2e-132 476.1 425 60.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 6.1e-131 472.2 502 52.2
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.4e-127 460.3 628 47.0
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 5.0e-125 452.6 409 58.4
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 8.3e-120 435.3 633 44.4
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 8.3e-120 435.3 635 43.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 1.3e-109 401.4 336 63.4
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.1e-107 394.0 633 41.9
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.1e-107 394.0 399 52.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-106 391.0 612 42.2
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.7e-104 384.4 348 59.5
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 3.2e-103 380.2 625 41.4
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-102 378.3 625 41.3
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.2e-102 378.3 628 40.9
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 2.0e-102 377.5 630 41.0
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-102 376.7 632 40.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 5.4e-95 352.8 404 50.5
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.5e-92 344.0 618 39.2
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.8e-91 340.5 617 38.6
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-82 311.6 614 37.8
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 5.2e-82 309.7 642 33.3
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-81 307.8 614 37.3
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-77 293.9 615 35.6
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 7.8e-70 269.2 586 36.3
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-63 248.8 566 33.9
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 3.1e-58 230.7 543 33.9
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 2.5e-52 211.1 315 42.2
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.1e-51 208.0 173 63.6
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 5.8e-49 199.9 633 27.6
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.2e-47 194.1 241 48.5
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 4.1e-42 177.2 191 52.9
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-39 167.5 149 58.4
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.2e-38 165.6 120 73.3
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 7.4e-36 156.4 118 68.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 2.8e-35 154.5 119 67.2
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 3.8e-32 144.1 378 32.8
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 3.8e-32 144.1 116 65.5
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 9.7e-28 129.4 158 48.1
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.7e-27 128.6 94 69.1
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 3.1e-26 124.4 106 59.4
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 9.1e-26 122.9 90 66.7
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 5.0e-24 117.1 94 63.8
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.1e-23 115.9 192 38.0
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.9e-23 115.2 468 26.3
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.5e-23 114.8 107 56.1
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 7.2e-23 113.2 137 49.6
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.0e-21 109.4 71 73.2
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-20 105.9 90 57.8
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.6e-20 104.8 83 61.4
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 8.2e-19 99.8 90 55.6
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.1e-18 99.4 177 39.0
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.4e-18 99.0 109 52.3
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 7.0e-18 96.7 70 64.3
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-17 95.9 114 50.0
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.9e-15 88.6 222 33.3
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 7.2e-15 86.7 222 32.9
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 7.2e-15 86.7 222 32.9
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-12 77.8 69 58.0
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 1.7e-11 75.5 58 65.5
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-11 75.5 51 66.7
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 4.5e-09 67.4 80 48.8
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 2.9e-08 64.7 113 43.4
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 5.0e-08 63.9 98 34.7
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 8.5e-08 63.2 52 59.6
Actinidia21257 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.5e-07 61.6 62 53.2
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-07 61.6 63 50.8


User provided reference genes

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