Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 5.2e-285 983.8 526 100.0
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 4.5e-273 944.1 568 90.8
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.4e-260 901.0 568 86.6
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.4e-235 817.4 574 78.0
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 5.7e-183 644.8 570 62.1
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 7.4e-183 644.4 564 62.8
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.7e-179 633.3 568 61.8
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 4.8e-174 615.1 558 61.8
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 8.2e-174 614.4 568 60.6
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.7e-171 606.7 570 59.8
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 5.0e-171 605.1 567 60.1
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 8.5e-171 604.4 568 59.9
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 8.5e-171 604.4 568 59.9
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 5.5e-170 601.7 569 58.7
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.0e-168 597.4 581 57.1
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 8.8e-168 594.3 568 59.7
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.5e-167 593.6 559 59.4
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 7.5e-167 591.3 572 57.3
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.8e-167 590.9 581 56.5
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.8e-167 590.9 581 56.5
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.2e-166 589.7 565 59.1
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-166 589.3 581 56.3
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.7e-166 589.0 581 56.1
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.3e-166 588.2 581 56.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 6.3e-166 588.2 570 57.7
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.3e-166 587.8 565 58.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.1e-165 584.3 581 56.1
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 1.2e-164 583.9 571 56.6
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 3.5e-164 582.4 581 55.6
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.5e-164 582.0 565 58.6
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-163 580.1 581 55.4
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 3.8e-163 578.9 571 57.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 7.2e-162 574.7 572 56.3
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.2e-162 574.7 573 57.2
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.8e-160 570.1 536 60.8
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.6e-159 566.2 573 56.9
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.0e-156 556.6 571 54.5
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.0e-156 556.6 565 55.9
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 7.7e-156 554.7 538 58.0
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 2.3e-155 553.1 572 54.4
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 8.0e-153 544.7 569 54.7
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.4e-152 543.9 470 62.8
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 9.8e-151 537.7 570 53.2
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-148 530.4 470 61.7
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.7e-147 526.9 568 53.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 6.6e-147 525.0 600 53.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.9e-146 523.5 595 51.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.8e-145 519.6 422 65.4
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 2.8e-145 519.6 564 53.2
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 4.0e-144 515.8 565 52.2
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 5.2e-144 515.4 575 52.5
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 2.0e-143 513.5 570 52.6
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 7.5e-143 511.5 594 51.7
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.3e-142 510.8 592 51.7
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 2.9e-142 509.6 592 51.2
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.9e-142 509.6 568 50.5
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.2e-140 504.2 581 52.0
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.0e-140 503.4 547 52.5
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 6.0e-140 501.9 592 51.2
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 7.8e-140 501.5 568 52.1
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.3e-139 500.0 582 51.9
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 6.6e-139 498.4 495 55.4
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.6e-139 498.0 571 50.1
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.5e-138 497.3 480 56.7
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.9e-138 496.9 590 49.8
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 5.6e-138 495.4 567 51.9
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 9.5e-138 494.6 586 50.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 6.2e-137 491.9 568 49.6
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 5.8e-135 485.3 568 49.5
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 4.9e-134 482.3 565 49.6
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 4.9e-134 482.3 560 50.5
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 8.3e-134 481.5 589 49.7
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.9e-133 480.3 582 48.6
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.9e-133 480.3 582 48.6
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 5.4e-133 478.8 565 49.9
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 5.4e-133 478.8 477 54.7
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.6e-132 477.2 500 54.0
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 3.5e-132 476.1 567 51.1
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.0e-131 474.6 425 60.5
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-131 473.8 559 50.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 2.5e-130 469.9 575 48.5
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-129 467.2 568 48.4
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-129 466.8 568 48.2
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 3.6e-129 466.1 568 48.2
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 4.7e-129 465.7 568 48.2
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 4.7e-129 465.7 497 52.5
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.1e-128 464.5 569 48.2
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.4e-125 454.1 568 47.7
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 3.2e-125 453.0 409 58.7
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 6.0e-124 448.7 587 47.7
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 4.7e-121 439.1 589 47.7
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.1e-120 438.0 569 46.7
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 6.8e-120 435.3 550 48.5
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.7e-118 430.6 588 45.6
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.0e-115 421.4 578 45.8
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 2.5e-114 416.8 592 44.3
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 5.3e-112 409.1 584 45.2
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.6e-111 406.8 568 44.9
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 9.9e-111 404.8 561 44.2
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 9.9e-111 404.8 557 46.1
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.2e-110 403.7 336 64.0
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.2e-110 403.7 541 47.3
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.3e-107 393.7 593 43.8
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.4e-106 388.7 496 49.6
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.3e-105 387.9 572 42.1
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 7.6e-103 378.6 348 58.9
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.9e-102 376.7 593 40.6
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 3.3e-98 363.2 592 39.0
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.1e-93 348.2 604 39.4
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 4.6e-92 342.8 570 40.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 6.0e-92 342.4 570 40.4
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 3.5e-84 316.6 432 44.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.5e-79 301.2 567 40.4
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 7.9e-76 288.9 563 38.7
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 8.8e-75 285.4 528 38.8
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 5.3e-72 276.2 532 38.7
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 3.0e-67 260.4 537 38.2
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 5.3e-64 249.6 358 42.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 7.0e-64 249.2 564 35.8
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 9.1e-64 248.8 536 36.9
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 2.6e-63 247.3 535 36.4
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 4.5e-63 246.5 569 34.1
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 8.2e-57 225.7 548 34.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.4e-56 224.9 247 52.6
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.1e-53 215.3 315 43.2
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 2.5e-53 214.2 484 32.4
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.4e-51 208.4 173 64.2
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.5e-50 204.9 518 34.0
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 6.3e-49 199.5 524 34.2
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 7.7e-47 192.6 241 48.5
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 7.7e-47 192.6 505 34.5
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 2.0e-42 177.9 436 33.5
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-41 175.3 523 32.9
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-41 173.7 191 52.4
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 7.7e-39 166.0 120 74.2
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-37 161.0 523 31.7
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.8e-35 154.8 118 68.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 6.8e-35 152.9 119 67.2
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.9e-35 152.5 524 30.3
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 2.7e-31 141.0 116 64.7
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 7.8e-31 139.4 373 32.7
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 7.3e-29 132.9 410 26.3
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-27 129.0 158 48.1
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 4.0e-27 127.1 94 69.1
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 7.5e-26 122.9 106 59.4
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.7e-25 121.7 90 66.7
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-24 119.0 94 66.0
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 6.0e-23 113.2 137 49.6
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.1e-21 109.0 346 28.6
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 7.3e-21 106.3 71 71.8
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 7.3e-21 106.3 85 61.2
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 2.1e-20 104.8 90 57.8
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-20 104.0 464 27.6
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 8.9e-19 99.4 177 39.0
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-18 98.6 90 55.6
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 3.4e-18 97.4 109 52.3
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 5.4e-16 90.1 222 33.8
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-15 88.2 222 33.3
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 2.1e-15 88.2 222 33.3
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-12 77.8 69 58.0
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 8.1e-12 76.3 51 68.6
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 8.4e-09 66.2 80 48.8
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 7.1e-08 63.2 52 59.6
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-07 61.6 63 50.8
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-06 59.3 98 33.7


User provided reference genes

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