Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0022100 Salix brachista HOM05D003149 ORTHO05D003529 5.8e-99 364.4 204 100.0
Sabra17G0021200 Salix brachista HOM05D003149 ORTHO05D003529 7.4e-38 161.4 80 98.8
Potri.017G035200 Populus trichocarpa HOM05D003149 ORTHO05D003529 2.9e-34 149.4 84 88.1
Potri.007G126300 Populus trichocarpa HOM05D003149 ORTHO05D003529 6.9e-28 128.3 84 77.4
Sabra07G0102400 Salix brachista HOM05D003149 ORTHO05D003529 1.5e-27 127.1 84 76.2
Duzib093G1636 Durio zibethinus HOM05D003149 ORTHO05D003529 1.7e-13 80.5 84 52.4
Cpa.g.sc71.18 Carica papaya HOM05D003149 ORTHO05D003529 3.7e-13 79.3 90 45.6
Thhalv10008336m.g Eutrema salsugineum HOM05D003149 ORTHO05D003529 1.0e-10 71.2 81 49.4
Manes.04G040400 Manihot esculenta HOM05D003149 ORTHO05D003529 1.0e-10 71.2 95 48.4
Thecc.05G003000 Theobroma cacao HOM05D003149 ORTHO05D003529 1.0e-10 71.2 92 43.5
Haze_00730 Corylus avellana HOM05D003149 ORTHO05D003529 1.7e-10 70.5 82 50.0
Sp1g04680 Schrenkiella parvula HOM05D003149 ORTHO05D003529 6.5e-10 68.6 82 50.0
CiPaw.02G056200 Carya illinoinensis HOM05D003149 ORTHO05D003529 8.5e-10 68.2 83 47.0
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 8.5e-10 68.2 85 47.1
Gorai.006G186400 Gossypium raimondii HOM05D003149 ORTHO05D003529 8.5e-10 68.2 80 45.0
C05p04220 Brassica napus HOM05D003149 ORTHO05D003529 1.1e-09 67.8 49 65.3
BolC5t29196H Brassica oleracea HOM05D003149 ORTHO05D003529 1.1e-09 67.8 49 65.3
Haze_00724 Corylus avellana HOM05D003149 ORTHO05D003529 1.1e-09 67.8 83 45.8
Nn1g09739 Nelumbo nucifera HOM05D003149 ORTHO05D003529 1.1e-09 67.8 89 47.2
SHI29168 Sapria himalayana HOM05D003149 ORTHO05D003529 1.1e-09 67.8 91 46.2
Gohir.D09G164600 Gossypium hirsutum HOM05D003149 ORTHO05D003529 1.5e-09 67.4 80 45.0
C03p20870 Brassica napus HOM05D003149 ORTHO05D003529 2.5e-09 66.6 72 50.0
BolC3t14437H Brassica oleracea HOM05D003149 ORTHO05D003529 2.5e-09 66.6 72 50.0
Manes.11G117400 Manihot esculenta HOM05D003149 ORTHO05D003529 3.2e-09 66.2 96 49.0
THA.LOC104826191 Tarenaya hassleriana HOM05D003149 ORTHO05D003529 3.2e-09 66.2 82 46.3
Ciclev10021620m.g Citrus clementina HOM05D003149 ORTHO05D003529 4.2e-09 65.9 80 47.5
Gohir.A09G168900 Gossypium hirsutum HOM05D003149 ORTHO05D003529 4.2e-09 65.9 80 45.0
BcaC05g24329 Brassica carinata HOM05D003149 ORTHO05D003529 5.5e-09 65.5 73 47.9
A08p36250 Brassica napus HOM05D003149 ORTHO05D003529 5.5e-09 65.5 64 53.1
BcaC05g24331 Brassica carinata HOM05D003149 ORTHO05D003529 7.2e-09 65.1 72 50.0
Dinv22647 Davidia involucrata HOM05D003149 ORTHO05D003529 9.4e-09 64.7 80 41.2
BraA03t11043Z Brassica rapa HOM05D003149 ORTHO05D003529 1.2e-08 64.3 72 50.0
Atru.chr3.1569 Acer truncatum HOM05D003149 ORTHO05D003529 2.1e-08 63.5 82 40.2
Atru.chr3.1588 Acer truncatum HOM05D003149 ORTHO05D003529 2.1e-08 63.5 82 40.2
A03p17790 Brassica napus HOM05D003149 ORTHO05D003529 2.1e-08 63.5 72 50.0
RcHm_v2.0_Chr4g0407911 Rosa chinensis HOM05D003149 ORTHO05D003529 2.1e-08 63.5 31 83.9
A10p04560 Brassica napus HOM05D003149 ORTHO05D003529 3.6e-08 62.8 81 43.2
BraA10t42720Z Brassica rapa HOM05D003149 ORTHO05D003529 3.6e-08 62.8 81 43.2
FvH4_4g11360 Fragaria vesca HOM05D003149 ORTHO05D003529 3.6e-08 62.8 32 78.1
FAN07G0836 Fragaria x ananassa HOM05D003149 ORTHO05D003529 3.6e-08 62.8 32 78.1
Sp4g14000 Schrenkiella parvula HOM05D003149 ORTHO05D003529 3.6e-08 62.8 66 48.5
AUR62030021 Chenopodium quinoa HOM05D003149 ORTHO05D003529 4.7e-08 62.4 88 39.8
C08p02270 Brassica napus HOM05D003149 ORTHO05D003529 6.1e-08 62.0 64 53.1
BolC8t47019H Brassica oleracea HOM05D003149 ORTHO05D003529 6.1e-08 62.0 64 53.1
AUR62002600 Chenopodium quinoa HOM05D003149 ORTHO05D003529 6.1e-08 62.0 42 61.9
CARHR125250 Cardamine hirsuta HOM05D003149 ORTHO05D003529 1.0e-07 61.2 107 38.3
BraA08t35529Z Brassica rapa HOM05D003149 ORTHO05D003529 1.4e-07 60.8 64 50.0
SGA_v2.0_scaffold340G49312 Striga asiatica HOM05D003149 ORTHO05D003529 3.0e-07 59.7 56 51.8
THA.LOC104815863 Tarenaya hassleriana HOM05D003149 ORTHO05D003529 3.0e-07 59.7 89 42.7
Thhalv10017019m.g Eutrema salsugineum HOM05D003149 ORTHO05D003529 4.0e-07 59.3 71 42.3
Sc09g0001350 Simmondsia chinensis HOM05D003149 ORTHO05D003529 4.0e-07 59.3 80 43.8
Hma1.2p1_1961F.1_g309090 Hydrangea macrophylla HOM05D003149 ORTHO05D003529 5.2e-07 58.9 56 55.4
MSTRG.8193 Avicennia marina HOM05D003149 ORTHO05D003529 6.8e-07 58.5 77 45.5
CSS0004883 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 6.8e-07 58.5 80 42.5
CSS0028064 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 6.8e-07 58.5 80 42.5
TAR362G1330 Trochodendron aralioides HOM05D003149 ORTHO05D003529 8.8e-07 58.2 80 37.5
Sc19g0002190 Simmondsia chinensis HOM05D003149 ORTHO05D003529 1.2e-06 57.8 30 73.3
RcHm_v2.0_Chr6g0263161 Rosa chinensis HOM05D003149 ORTHO05D003529 1.5e-06 57.4 28 82.1
CARHR005400 Cardamine hirsuta HOM05D003149 ORTHO05D003529 2.0e-06 57.0 80 40.0
PGR083G1968 Punica granatum HOM05D003149 ORTHO05D003529 2.0e-06 57.0 37 62.2
SGA_v2.0_scaffold122G33204 Striga asiatica HOM05D003149 ORTHO05D003529 2.0e-06 57.0 77 45.5
Actinidia03243 Actinidia chinensis HOM05D003149 ORTHO05D003529 2.6e-06 56.6 42 57.1
AT1G05860 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 2.6e-06 56.6 80 40.0
FvH4_2g08280 Fragaria vesca HOM05D003149 ORTHO05D003529 2.6e-06 56.6 35 65.7
FAN15G2890 Fragaria x ananassa HOM05D003149 ORTHO05D003529 2.6e-06 56.6 35 65.7
FAN24G1951 Fragaria x ananassa HOM05D003149 ORTHO05D003529 2.6e-06 56.6 35 65.7
PSO675G5052 Papaver somniferum HOM05D003149 ORTHO05D003529 2.6e-06 56.6 34 61.8
AL1G15800 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 3.4e-06 56.2 66 43.9
AT2G31600 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 3.4e-06 56.2 73 39.7
Carub.0004s1290 Capsella rubella HOM05D003149 ORTHO05D003529 3.4e-06 56.2 66 43.9
Oeu001216.1 Olea europaea HOM05D003149 ORTHO05D003529 3.4e-06 56.2 67 44.8
Cfa015771 Carpinus fangiana HOM05D003149 ORTHO05D003529 5.7e-06 55.5 83 43.4
HanXRQChr07g0186141 Helianthus annuus HOM05D003149 ORTHO05D003529 5.7e-06 55.5 40 55.0
Medtr7g084890 Medicago truncatula HOM05D003149 ORTHO05D003529 7.5e-06 55.1 42 59.5
Phvul.004G067500 Phaseolus vulgaris HOM05D003149 ORTHO05D003529 7.5e-06 55.1 42 59.5
TWI18G1429 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 7.5e-06 55.1 40 60.0
FAN06G1791 Fragaria x ananassa HOM05D003149 ORTHO05D003529 9.8e-06 54.7 31 71.0
MD04G1037400 Malus domestica HOM05D003149 ORTHO05D003529 9.8e-06 54.7 34 64.7


User provided reference genes

Program Settings