Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 0.0e+00 1482.2 778 100.0
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.9e-299 1032.3 756 73.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 1.1e-251 873.6 719 68.2
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 5.5e-166 589.0 754 46.0
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.3e-162 577.8 757 45.3
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 3.9e-148 529.6 765 42.9
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 4.8e-146 522.7 756 43.5
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 6.3e-146 522.3 789 41.7
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 2.7e-141 506.9 821 41.3
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.1e-141 505.8 749 43.8
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 6.1e-141 505.8 754 42.7
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 3.3e-139 500.0 789 39.9
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.4e-139 499.6 797 39.8
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 8.2e-138 495.4 693 43.3
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 7.0e-137 492.3 805 39.1
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.2e-136 491.5 653 45.5
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 7.7e-136 488.8 672 43.8
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 8.5e-135 485.3 763 40.9
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 2.1e-133 480.7 709 42.0
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.4e-132 478.0 760 40.5
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 2.1e-125 454.1 718 41.5
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.8e-124 451.1 757 39.4
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 1.5e-123 448.0 758 36.7
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.5e-123 445.7 783 38.4
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 9.8e-123 445.3 782 38.0
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.7e-122 443.4 752 36.8
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.0e-121 439.1 748 40.8
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.0e-120 437.6 750 37.7
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 6.6e-119 432.6 896 36.0
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 7.3e-118 429.1 756 38.0
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 9.5e-118 428.7 750 38.4
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.0e-116 425.2 752 36.6
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.8e-116 422.5 805 36.0
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.0e-115 421.0 750 37.5
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 2.6e-115 420.6 759 37.3
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.9e-114 416.4 827 34.9
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.1e-113 415.2 773 36.0
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 1.9e-113 414.5 748 37.2
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.9e-113 414.5 797 35.0
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 3.2e-113 413.7 787 35.5
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 9.2e-113 412.1 746 36.2
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-112 411.8 748 35.8
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-111 407.9 763 37.6
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.2e-109 401.7 831 35.1
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.6e-109 401.4 897 33.3
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 3.1e-108 397.1 756 37.7
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 4.1e-105 386.7 754 36.1
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.5e-102 378.3 707 37.1
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 2.5e-102 377.5 707 35.8
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 4.3e-102 376.7 818 33.0
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 3.1e-100 370.5 597 40.5
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 8.9e-100 369.0 743 34.5
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.7e-98 364.8 874 32.6
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 2.9e-98 364.0 469 45.2
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.3e-94 350.5 744 34.4
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 8.1e-93 345.9 650 35.2
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.2e-91 342.0 786 32.7
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.5e-91 341.7 744 33.3
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.3e-90 338.6 830 32.7
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.9e-90 337.4 752 32.3
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 5.4e-89 333.2 846 32.3
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.6e-88 331.6 610 35.6
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 4.3e-86 323.6 833 32.4
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.2e-85 322.0 438 40.9
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.4e-84 318.5 739 31.4
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 9.0e-84 315.8 784 32.0
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 2.6e-83 314.3 735 31.7
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.1e-81 308.9 750 31.2
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.9e-81 308.1 760 35.1
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 4.6e-80 303.5 783 30.0
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 7.8e-80 302.8 750 30.9
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 6.6e-79 299.7 745 32.5
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.9e-78 298.1 751 32.2
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 3.3e-78 297.4 273 56.8
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.6e-77 295.0 736 31.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 6.2e-77 293.1 773 32.6
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 8.1e-77 292.7 751 31.7
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.1e-76 292.4 751 32.0
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.8e-76 291.6 312 51.0
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.3e-76 290.0 740 31.6
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.0e-76 289.3 311 51.4
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 3.4e-75 287.3 367 43.6
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.5e-75 287.0 319 49.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 5.8e-75 286.6 752 31.4
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 7.6e-75 286.2 834 31.7
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 6.4e-74 283.1 740 31.5
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.2e-72 278.9 327 48.0
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.3e-71 275.4 772 29.1
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 3.0e-71 274.2 620 32.6
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.3e-69 268.9 871 30.5
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.3e-69 268.9 339 44.2
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.7e-69 267.3 312 47.8
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 3.7e-69 267.3 754 30.8
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.8e-69 266.9 308 48.1
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.8e-69 266.9 741 30.0
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.4e-68 265.4 342 43.6
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.1e-68 264.2 382 40.8
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 5.3e-68 263.5 344 45.9
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-65 255.4 300 47.3
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.9e-65 255.0 317 42.3
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 7.1e-65 253.1 883 27.0
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 3.5e-64 250.8 345 40.3
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 3.5e-64 250.8 767 29.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.0e-64 250.0 600 31.5
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.9e-64 249.6 266 52.3
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 7.4e-62 243.0 753 29.1
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 7.4e-62 243.0 780 28.7
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 8.2e-61 239.6 303 45.9
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 2.0e-59 235.0 746 28.4
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.4e-57 228.8 352 38.4
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.3e-57 226.1 311 43.4
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.7e-56 224.6 645 29.9
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.3e-55 222.2 303 41.3
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 2.3e-55 221.5 277 44.0
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 3.7e-53 214.2 800 26.5
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.0e-50 206.1 224 48.2
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.9e-49 201.8 488 33.4
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 1.9e-49 201.8 231 48.5
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 5.7e-46 190.3 301 38.2
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 8.2e-45 186.4 265 43.4
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 3.1e-44 184.5 741 25.8
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 7.7e-43 179.9 296 37.5
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 6.5e-42 176.8 292 38.0
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 3.2e-41 174.5 675 27.7
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 5.5e-41 173.7 172 48.3
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.2e-40 172.6 238 43.3
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 6.7e-39 166.8 327 37.0
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.0e-35 155.2 188 47.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.0e-35 155.2 188 47.9
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.2e-33 147.9 227 38.8
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 9.4e-33 146.4 219 39.7
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.0e-26 126.3 151 43.0
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.3e-26 125.9 226 34.5
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 5.2e-23 114.0 343 30.0
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 8.8e-23 113.2 492 26.2
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.2e-22 112.8 158 39.2
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.2e-22 112.8 129 46.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 5.7e-22 110.5 165 35.8
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 8.3e-21 106.7 121 46.3
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 2.7e-19 101.7 205 34.6
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 4.5e-19 100.9 205 34.1
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 7.7e-19 100.1 205 34.1
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 1.0e-18 99.8 216 32.9
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.2e-18 98.6 206 33.5
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 2.2e-18 98.6 160 37.5
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 3.2e-17 94.7 185 34.1
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 5.5e-17 94.0 221 33.0
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.6e-16 91.3 150 39.3
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 8.0e-16 90.1 169 33.7
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 2.4e-12 78.6 76 51.3
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 2.7e-11 75.1 155 32.3
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 2.9e-10 71.6 91 44.0
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 3.3e-09 68.2 127 32.3
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 4.7e-08 64.3 94 37.2
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 6.8e-07 60.5 235 27.2
SEGI_13457 Sequoiadendron giganteum HOM05D035915 ORTHO05D004606 8.9e-07 60.1 91 35.2
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 2.6e-06 58.5 155 28.4


User provided reference genes

Program Settings