Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.1e-243 846.3 430 100.0
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 3.6e-159 565.5 362 81.2
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.5e-149 533.5 362 76.0
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 1.1e-120 437.6 327 69.4
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.2e-119 434.1 332 68.7
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 3.1e-118 429.5 337 65.9
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 5.2e-118 428.7 313 70.3
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.2e-117 427.6 313 69.0
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.4e-116 421.4 314 68.2
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.1e-115 421.0 313 69.3
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.1e-115 421.0 312 68.6
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.9e-115 420.2 313 69.3
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 2.4e-115 419.9 318 67.9
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.2e-115 419.5 313 68.4
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 4.2e-115 419.1 330 65.8
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 5.4e-115 418.7 344 66.0
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.2e-114 417.5 336 64.3
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 1.6e-114 417.2 318 68.2
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.7e-114 416.4 313 68.4
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 6.0e-114 415.2 330 65.2
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.0e-113 414.5 311 68.2
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.3e-113 414.1 356 62.6
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 3.0e-113 412.9 312 67.0
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 3.0e-113 412.9 317 66.6
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 3.9e-113 412.5 358 60.6
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 5.1e-113 412.1 310 66.5
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 8.7e-113 411.4 322 65.8
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.1e-112 411.0 322 65.8
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.5e-112 410.6 337 64.4
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.9e-112 410.2 310 68.4
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.5e-112 409.8 315 67.0
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 2.5e-112 409.8 343 61.2
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 3.3e-112 409.5 341 63.6
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.3e-112 409.1 337 64.4
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 5.6e-112 408.7 312 67.3
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 7.3e-112 408.3 360 61.4
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 9.6e-112 407.9 315 66.7
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 9.6e-112 407.9 350 60.6
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 1.3e-111 407.5 359 61.6
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 2.8e-111 406.4 259 74.9
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 2.8e-111 406.4 344 62.2
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.6e-111 406.0 321 64.8
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 3.6e-111 406.0 341 62.5
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 3.6e-111 406.0 359 61.6
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 4.8e-111 405.6 312 65.4
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 6.2e-111 405.2 321 64.2
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 6.2e-111 405.2 320 64.1
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.1e-110 404.4 313 65.5
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.1e-110 404.4 326 64.1
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.4e-110 404.1 349 61.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.4e-110 403.3 323 64.4
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 3.1e-110 402.9 312 66.3
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 4.0e-110 402.5 322 64.0
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 4.0e-110 402.5 341 61.9
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 4.0e-110 402.5 341 61.9
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 4.0e-110 402.5 329 63.5
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 5.3e-110 402.1 343 61.2
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 5.3e-110 402.1 358 60.6
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 5.3e-110 402.1 320 65.0
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 5.3e-110 402.1 321 63.6
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 6.9e-110 401.7 341 61.9
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 6.9e-110 401.7 341 61.9
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.9e-110 401.7 341 62.2
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 9.0e-110 401.4 321 64.5
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.2e-109 401.0 345 62.6
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.5e-109 400.6 318 65.1
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.5e-109 400.6 343 60.1
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 2.6e-109 399.8 317 63.7
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 3.4e-109 399.4 360 58.3
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 4.4e-109 399.1 346 62.1
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 4.4e-109 399.1 320 65.6
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 5.8e-109 398.7 315 64.8
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 7.6e-109 398.3 341 61.3
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 9.9e-109 397.9 339 61.4
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 9.9e-109 397.9 318 64.5
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.3e-108 397.5 321 63.6
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.3e-108 397.5 315 64.4
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.3e-108 397.5 312 65.4
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.7e-108 397.1 327 62.1
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.7e-108 397.1 320 63.4
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.7e-108 397.1 365 59.5
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.7e-108 397.1 361 58.2
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.9e-108 396.4 315 64.8
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 2.9e-108 396.4 327 61.8
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 4.9e-108 395.6 339 61.1
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.9e-108 395.6 321 63.6
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 4.9e-108 395.6 313 64.2
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 6.4e-108 395.2 315 64.8
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 8.4e-108 394.8 311 64.6
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.4e-107 394.0 334 61.7
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.4e-107 394.0 318 64.2
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.2e-107 392.9 384 57.3
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 4.2e-107 392.5 321 62.6
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 4.2e-107 392.5 366 57.7
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 5.4e-107 392.1 313 64.5
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 5.4e-107 392.1 326 62.3
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 7.1e-107 391.7 321 62.0
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 9.3e-107 391.3 308 64.9
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.6e-106 390.6 384 57.0
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.6e-106 390.6 326 62.0
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 2.7e-106 389.8 323 62.5
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 4.6e-106 389.0 338 60.4
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 6.0e-106 388.7 262 72.1
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 6.0e-106 388.7 322 61.8
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 7.8e-106 388.3 320 61.9
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 7.8e-106 388.3 318 63.5
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 1.7e-105 387.1 310 63.5
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 3.0e-105 386.3 337 58.5
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 3.9e-105 386.0 319 63.3
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 6.6e-105 385.2 255 73.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.7e-105 384.8 262 71.8
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 8.7e-105 384.8 323 61.9
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.1e-104 384.4 328 61.3
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.3e-104 382.9 310 62.9
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 4.3e-104 382.5 316 61.7
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 4.3e-104 382.5 316 61.7
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.1e-102 377.9 375 55.5
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 1.1e-102 377.9 326 59.5
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.1e-102 377.9 316 61.4
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.4e-102 377.5 308 62.3
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 3.1e-102 376.3 310 62.9
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 4.0e-102 375.9 301 64.8
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 4.5e-101 372.5 330 58.8
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 7.6e-101 371.7 344 59.0
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.4e-99 367.5 326 58.3
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 4.2e-99 365.9 358 54.7
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.6e-98 364.0 311 61.7
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 1.8e-97 360.5 343 58.3
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.9e-96 357.1 319 57.4
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 2.5e-96 356.7 311 59.8
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 2.1e-95 353.6 310 61.9
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.4e-94 350.9 311 57.9
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.5e-93 347.4 251 69.7
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.3e-92 344.4 347 54.5
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 2.2e-92 343.6 320 57.5
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 3.5e-90 336.3 364 50.5
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 4.8e-87 325.9 235 68.9
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 4.2e-83 312.8 312 52.2
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.6e-82 310.8 366 47.5
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.3e-81 307.8 311 54.7
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 2.5e-75 287.0 232 65.1
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 7.9e-74 282.0 222 66.7
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.9e-73 279.6 262 53.8
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 8.8e-73 278.5 331 48.3
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 6.3e-71 272.3 180 75.6
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 5.3e-70 269.2 330 46.4
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 9.1e-70 268.5 185 72.4
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.2e-66 258.1 263 54.4
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.3e-64 250.0 238 60.1
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 5.7e-56 222.6 219 57.5
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 4.8e-55 219.5 214 58.4
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.1e-54 218.4 254 50.8
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.4e-49 201.4 284 46.8
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 2.2e-47 194.1 174 59.2
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.2e-45 188.3 161 56.5
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.6e-45 188.0 195 53.8
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.7e-44 184.5 159 61.0
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 8.3e-39 165.6 182 51.1
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 2.8e-26 124.0 126 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.7e-26 123.2 173 42.8
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 2.9e-23 114.0 89 61.8
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.9e-22 111.3 71 78.9
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 2.4e-22 110.9 113 52.2
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 4.1e-22 110.2 75 73.3
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 9.2e-22 109.0 320 26.6
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.1e-19 102.1 158 42.4
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.5e-19 101.7 157 42.0
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 9.8e-16 89.0 62 77.4
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.9e-12 77.0 83 50.6
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.5e-08 65.1 97 40.2
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 2.6e-08 64.3 173 29.5
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 4.1e-06 57.0 33 78.8


User provided reference genes

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