Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-88 329.3 166 100.0
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 6.9e-26 121.3 101 65.3
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 2.6e-25 119.4 120 58.3
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 8.7e-21 104.4 108 53.7
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 2.5e-20 102.8 140 45.7
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 7.4e-20 101.3 92 54.3
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.6e-19 100.1 134 47.0
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.6e-19 100.1 134 47.0
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 2.2e-19 99.8 115 50.4
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 2.8e-19 99.4 109 51.4
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 4.8e-19 98.6 122 45.1
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 4.8e-19 98.6 112 48.2
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 4.8e-19 98.6 101 53.5
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 6.3e-19 98.2 111 45.9
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 8.2e-19 97.8 103 49.5
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.1e-18 97.4 117 49.6
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 4.1e-18 95.5 106 45.3
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 5.3e-18 95.1 102 50.0
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 9.0e-18 94.4 118 44.9
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.2e-17 94.0 122 45.1
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.5e-17 93.6 122 45.1
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.6e-17 92.8 106 47.2
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.6e-17 92.8 170 38.2
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 3.4e-17 92.4 103 48.5
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 7.7e-17 91.3 109 45.9
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 7.7e-17 91.3 109 45.9
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.0e-16 90.9 103 48.5
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.7e-16 90.1 132 40.9
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.7e-16 90.1 107 43.9
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 5.0e-16 88.6 123 38.2
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 5.0e-16 88.6 102 48.0
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 5.0e-16 88.6 101 49.5
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 6.5e-16 88.2 128 41.4
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 6.5e-16 88.2 129 42.6
Sabra17G0015000 Salix brachista HOM05D001295 ORTHO05D349015 6.5e-16 88.2 154 40.9
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 8.5e-16 87.8 117 45.3
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 8.5e-16 87.8 108 43.5
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.1e-15 87.4 108 43.5
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.4e-15 87.0 123 39.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 1.4e-15 87.0 103 44.7
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 2.5e-15 86.3 110 48.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.2e-15 85.9 118 40.7
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 4.2e-15 85.5 118 46.6
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 5.5e-15 85.1 103 46.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.5e-15 85.1 104 45.2
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.5e-15 85.1 108 46.3
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 5.5e-15 85.1 98 51.0
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 5.5e-15 85.1 98 51.0
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 5.5e-15 85.1 103 47.6
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 7.2e-15 84.7 121 45.5
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 7.2e-15 84.7 109 47.7
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 9.4e-15 84.3 103 42.7
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 9.4e-15 84.3 132 41.7
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-14 84.0 106 48.1
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.2e-14 84.0 112 49.1
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.2e-14 84.0 98 51.0
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.2e-14 84.0 105 47.6
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 1.6e-14 83.6 109 44.0
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.6e-14 83.6 109 45.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.6e-14 83.6 118 45.8
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.1e-14 83.2 106 49.1
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.1e-14 83.2 107 43.9
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.1e-14 83.2 104 46.2
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 2.1e-14 83.2 98 49.0
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 2.7e-14 82.8 118 40.7
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.7e-14 82.8 130 41.5
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 2.7e-14 82.8 109 39.4
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 4.6e-14 82.0 106 47.2
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 4.6e-14 82.0 112 46.4
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 4.6e-14 82.0 105 45.7
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 7.9e-14 81.3 106 46.2
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 7.9e-14 81.3 109 39.4
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 1.0e-13 80.9 63 57.1
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 1.0e-13 80.9 140 35.7
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.0e-13 80.9 109 39.4
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.4e-13 80.5 126 42.1
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.8e-13 80.1 103 39.8
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 2.3e-13 79.7 122 41.8
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.0e-13 79.3 93 43.0
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.9e-13 79.0 49 71.4
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.9e-13 79.0 141 39.0
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 5.1e-13 78.6 127 39.4
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.1e-13 78.6 103 38.8
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 6.7e-13 78.2 75 56.0
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 8.8e-13 77.8 109 43.1
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.1e-12 77.4 103 38.8
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 2.0e-12 76.6 100 42.0
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 2.0e-12 76.6 109 38.5
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 2.0e-12 76.6 103 39.8
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 4.3e-12 75.5 59 62.7
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.3e-12 75.5 132 40.2
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 4.3e-12 75.5 104 41.3
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 5.7e-12 75.1 73 53.4
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 7.4e-12 74.7 121 34.7
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 9.7e-12 74.3 103 39.8
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.7e-11 73.6 141 34.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.7e-11 73.6 100 45.0
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 6.3e-11 71.6 131 38.9
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.1e-10 70.9 59 57.6
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.1e-10 70.9 142 35.9
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.4e-10 70.5 106 42.5
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.4e-10 69.7 129 36.4
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 4.1e-10 68.9 140 32.9
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 6.9e-10 68.2 122 37.7
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 2.6e-09 66.2 88 38.6
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 4.5e-09 65.5 52 53.8
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 5.9e-09 65.1 110 35.5
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 7.7e-09 64.7 89 42.7
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.0e-08 64.3 118 38.1
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.1e-07 60.8 107 35.5
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.4e-07 60.5 144 31.9
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 4.2e-07 58.9 102 34.3
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.7e-06 56.2 113 32.7
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 6.1e-06 55.1 104 29.8


User provided reference genes

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